PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP012907.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Nin-like
Protein Properties Length: 373aa    MW: 42026.2 Da    PI: 4.4281
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP012907.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.58.7e-26285335252
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  +++++l+dl+ yF+lpi++AA+ L+vc+Tv+KriCR++G++RWP+Rki+s+
  PCP012907.1 285 TANMTLDDLRGYFHLPIQKAARRLKVCPTVVKRICRRNGLNRWPSRKIRSI 335
                  789**********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    
MADPRAVVPY HDPYENGLCS DIMNFLYDSE HAILGENVPL PPLDDEGLTC PTNPISLFDE  60
GIQDLDDPLL DQATWDFLNQ CSNGGGNVDS QAGPSQIIGQ SSGTSPPRGD NNEQNQGFGD  120
PMPLSVWPAI PVPFNCSCCQ LLREIIHLNG NQVMKFDIHG RFGMISHAIL QSFNVNSSDN  180
HQYQMFDFCK KSMEEVKQFL MQYCLERKLE GYIMQQDPMA IFYEALCVGL EWDDILNTDD  240
FTFPPSPPNS GRAGEVEQQQ PAADQLEAAE DENERISLAA QRERTANMTL DDLRGYFHLP  300
IQKAARRLKV CPTVVKRICR RNGLNRWPSR KIRSINRQIS RLTPSLESDD ANTRVHAEAE  360
ISRLEREIAE LVP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.15e-16Nin-like family protein