PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012918.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 247aa MW: 27899.5 Da PI: 5.2322

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012918.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ l+d+++ +G g W+ +++ g++R++k+c++rw++yl PCP012918.1 14 RGPWTALEDKMLADYIQAHGEGKWSNVPKQAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	39.2	1.6e-12	70	109	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 T++E++l+++++k+lG++ W++Ia +++ gRt ++ ++w+ PCP012918.1 70 ITKDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTKDEIENYWH 109 59***************.*****.*********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MGRNPCCSKE GVKRGPWTAL EDKMLADYIQ AHGEGKWSNV PKQAGLKRCG KSCRLRWLNY 60 LRPSIKGGDI TKDEEDLIIR LHKLLGNRWS LIAGRIPGRT KDEIENYWHC KLCKKQQEDH 120 ILSCRPSTST EIADTVQQSK VEVHLENDPS CNNNFALGSS MLCDLTDIMA EESETSSGSL 180 LSASKSREED RSSCWENILM EDFHTREMSL SEFLDTDFTK LSNVFGFGMC DVMSNEVLLE 240 GESGYGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-55	MYB family protein