PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012942.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 297aa MW: 33224.9 Da PI: 7.3318

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012942.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.5	1.8e-14	14	65	1	48
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+ + + +G++ +W +++ g++R++k+c++rw++yl PCP012942.1 14 RGPWSPEEDAALKSYLQSHGSDgtasNWIHLPKKAGLRRCGKSCRLRWLNYL 65 89************************************************97 PP
2	Myb_DNA-binding	45.9	1.3e-14	72	131	2	46
SSS-HHHHHHHHHHHHHTTTT................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg................tWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ ++ +q+G++ +W+ Ia++m+ gRt++++k++w++ PCP012942.1 72 GGFTEEEDSIICNLYNQMGSRqyfltylqflnspnflRWSVIASYMP-GRTDNDVKNYWNT 131 569******************************************.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MGRTPCCDKE NVKRGPWSPE EDAALKSYLQ SHGSDGTASN WIHLPKKAGL RRCGKSCRLR 60 WLNYLRPDIK HGGFTEEEDS IICNLYNQMG SRQYFLTYLQ FLNSPNFLRW SVIASYMPGR 120 TDNDVKNYWN TKLKKKLLGG KIKNISSREP TVANNANFSG IPEAEKPQDS TFWTSQTQVP 180 STLQMLYDVN SGLSADNQTM SLNPDQLYNP KLSGFSDFGA RSRGSYSTTV SLSQEGSSVS 240 DSSSIAGNRY LDQDYGFLMD YGFGVAYDNN VNHYGMCFGD KTSEVGPTGC TDFGDFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65790.1	2e-58	MYB family protein