PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP012946.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 261aa    MW: 29295 Da    PI: 7.7666
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP012946.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox413.2e-131271572656
                  -HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  26 saeereeLAkklgLterqVkvWFqNrRakek 56 
                  s+++++eLA+kl+L  rqV vWFqNrRa+ k
  PCP012946.1 127 SRKQKQELARKLNLRPRQVEVWFQNRRARTK 157
                  789**************************98 PP
2HD-ZIP_I/II90.42.1e-291261902488
  HD-ZIP_I/II  24 LeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                   + ++K+elar+L+l+prqv+vWFqnrRARtk+kq+E ++e Lk+++++lkeen+rL+ke +eL+
  PCP012946.1 126 SSRKQKQELARKLNLRPRQVEVWFQNRRARTKLKQTEAECELLKQCCETLKEENRRLHKELQELK 190
                  46799***********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MGFDHEACNT GLGLSLGCQG NPDHHTNLQA FDLDHQKKKK IQLKYDHLLP ALTLGPSSGA  60
KIEAAKSDDH LHQVVYVQAQ EQASSPCSGA VSSFSNSSSF KRDRGLGVEE IEGEVEEERV  120
VNITTSSRKQ KQELARKLNL RPRQVEVWFQ NRRARTKLKQ TEAECELLKQ CCETLKEENR  180
RLHKELQELK LMKQTATAAA PFYMQFPTAT LTMCPSCEKI CNVGDHHNHN HNESSTSPFL  240
VGSNKNHLIF NPYSTHPSTA C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152160RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-45HD-ZIP family protein