PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012950.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 416aa MW: 46310.7 Da PI: 6.62

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012950.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.3e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q+G+g +W + ++++g+ R++k+c++rw++yl PCP012950.1 14 RGPWSPEEDAKLKSYIEQHGTGgNWIALPQKIGLQRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	39.3	1.5e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ m+ gRt++++k++w++ PCP012950.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQMP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLQRC GKSCRLRWLN 60 YLRPNIRHGG FSEEEDNIIC SLYISIGSRW SIIAAQMPGR TDNDIKNYWN TRLKKKLLGR 120 QRKEHQLARK SGLVKQDTIK RSGGVGGNST NSHSAVPATD DQNPYWPELP VHAVPTVLPQ 180 QQQQPCFNDH ASLRKLLIKL GGRFGSDVNH NHETNQVIQG RPANIQPTYQ VLDDDNYSPY 240 AAAAAATQQM DEHYSGKNMQ SLLIPRCGIH ALNDSSLSLS NDVISPHQFA QTHYIVNTDN 300 IDGPGNGIMN NMFQGQGGNY ETDQLKEMVV YNNNDNQHRF DGLEFFCGEE MMVNNRITSS 360 YGESIGWGEM LGCPPVASSS DDYHDSMDRL IMPATPGQEC GFANDQLMSG YPGEAL

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MGRAPCCDKA NVKRGPWSPE EDAKLKSYIE QHGTGGNWIA LPQKIGLQRC GKSCRLRWLN  60
YLRPNIRHGG FSEEEDNIIC SLYISIGSRW SIIAAQMPGR TDNDIKNYWN TRLKKKLLGR  120
QRKEHQLARK SGLVKQDTIK RSGGVGGNST NSHSAVPATD DQNPYWPELP VHAVPTVLPQ  180
QQQQPCFNDH ASLRKLLIKL GGRFGSDVNH NHETNQVIQG RPANIQPTYQ VLDDDNYSPY  240
AAAAAATQQM DEHYSGKNMQ SLLIPRCGIH ALNDSSLSLS NDVISPHQFA QTHYIVNTDN  300
IDGPGNGIMN NMFQGQGGNY ETDQLKEMVV YNNNDNQHRF DGLEFFCGEE MMVNNRITSS  360
YGESIGWGEM LGCPPVASSS DDYHDSMDRL IMPATPGQEC GFANDQLMSG YPGEAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	8e-80	MYB family protein