PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012958.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 648aa MW: 71207 Da PI: 7.3573

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012958.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37	8.2e-12	291	347	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g PCP012958.1 291 SQFRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 347 789****************77776664346655.77****************98 PP
2	AP2	50.6	4.9e-16	392	441	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g PCP012958.1 392 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 441 9*************988532...5***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence
MKSMNDHNNN NNGSSNSNNN NWLGFSLLPH MKMEAAASSS SSATLPSNSS FYNLSSSGLC 60 CYGVGENGNF HYSPLSAMPL RSDGSLCIME ALSRSQTGMM PNTSPKLEDF LGGAAHDYVS 120 EEREAMALSL DSYYNAEAEQ QQNHHIPLHS SSYYSGIPIQ GIYQTQMEEE HSKNTQMTQI 180 PEDLKTCWVS RQYSAHPALE HHHMNNVTMV DDNGGSGSIN GGMNRGDLQS LTLSMSPGSQ 240 SSCVTAPRQI SPTQTECAVA VIETKKRGCG KLGQKQPVHR KSIDTFGQRT SQFRGVTRHR 300 WTGRYEAHLW DNSCKKEGQT RKGRQGGYDM EEKAARAYDL AALKYWGSST HINFPLDNYA 360 AQLDEMKNMS RQEYVAHLRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG 420 TFGTQEEAAE AYDIAAIKFR GANAVTNFDI TKYDVEKIMS SNTLLAGEFA RRTKVVEPNI 480 AAPAIEYNPP TQNNAEANQP EINNGNSLDW KMALYQSAAQ QQADSCVQTL DQKSVGSASY 540 RNLSFSMALE DYIGVESVHS SQTMMDETAR VGPHFSNPSS LVTSLGSSRE ASPDKSGSNM 600 LFAKPPLASK FVSPTSAAAV SSWFPSAQLR PAAISMSQLP LFAAWNET

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence

MKSMNDHNNN NNGSSNSNNN NWLGFSLLPH MKMEAAASSS SSATLPSNSS FYNLSSSGLC  60
CYGVGENGNF HYSPLSAMPL RSDGSLCIME ALSRSQTGMM PNTSPKLEDF LGGAAHDYVS  120
EEREAMALSL DSYYNAEAEQ QQNHHIPLHS SSYYSGIPIQ GIYQTQMEEE HSKNTQMTQI  180
PEDLKTCWVS RQYSAHPALE HHHMNNVTMV DDNGGSGSIN GGMNRGDLQS LTLSMSPGSQ  240
SSCVTAPRQI SPTQTECAVA VIETKKRGCG KLGQKQPVHR KSIDTFGQRT SQFRGVTRHR  300
WTGRYEAHLW DNSCKKEGQT RKGRQGGYDM EEKAARAYDL AALKYWGSST HINFPLDNYA  360
AQLDEMKNMS RQEYVAHLRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  420
TFGTQEEAAE AYDIAAIKFR GANAVTNFDI TKYDVEKIMS SNTLLAGEFA RRTKVVEPNI  480
AAPAIEYNPP TQNNAEANQP EINNGNSLDW KMALYQSAAQ QQADSCVQTL DQKSVGSASY  540
RNLSFSMALE DYIGVESVHS SQTMMDETAR VGPHFSNPSS LVTSLGSSRE ASPDKSGSNM  600
LFAKPPLASK FVSPTSAAAV SSWFPSAQLR PAAISMSQLP LFAAWNET

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-151	AP2 family protein