PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP013078.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 231aa    MW: 26000.3 Da    PI: 4.3986
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP013078.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.59.9e-31381701128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 
                  lp G+rF+Pt +e++v+yL +k+ ++ +++ + ikevd+y+++P++Lp+   +++a+ +  y+F++r+   a + +  + at+ gyWk    ++evl 
  PCP013078.1  38 LPLGYRFDPTGDEILVYYLFNKIMDRAMPTYDLIKEVDVYECDPNQLPNgdfRHTADFNAAYYFANREPFDACEGKIIKtATNGGYWKVIDDEEEVLF 135
                  699*********************************************5455555566688********999766655559***********999998 PP

          NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  + ++  vg  +++ fykg+ap+g+kt  vm+eyrl
  PCP013078.1 136 EdSNVIVGFETVMKFYKGQAPNGTKTPFVMNEYRL 170
                  8456669**************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MSSSMASSAS QSADENEGFD LLKCSTVQEG KKDAEIRLPL GYRFDPTGDE ILVYYLFNKI  60
MDRAMPTYDL IKEVDVYECD PNQLPNGDFR HTADFNAAYY FANREPFDAC EGKIIKTATN  120
GGYWKVIDDE EEVLFEDSNV IVGFETVMKF YKGQAPNGTK TPFVMNEYRL NPRVVPAHVL  180
NESIKNKIEK YVVCQIINKE VSNQPAIEYG QGLLELLQKS SAGTVEDGVP K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-25NAC family protein