PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP013106.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27094.9 Da    PI: 9.8722
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP013106.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.42.5e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtf+kRr+g+lKKA+ELSvLCdaeva+i+fs++gkl e+ss
  PCP013106.1  9 KRIENKINRQVTFAKRRKGLLKKAYELSVLCDAEVALIVFSTRGKLSEFSS 59
                 79***********************************************96 PP
2K-box96.15.4e-32801737100
        K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                   s+++++++s +q++ kLk ++e Lqr+qRhllGedL  L +keLqqLe+qL+ slkkiR +K+++++ qi+elq+ke++l e+n+ Lr+klee
  PCP013106.1  80 ASQSAEDEQSRYQDYLKLKTKVEALQRTQRHLLGEDLVHLGMKELQQLENQLDMSLKKIRCTKTQFMHVQISELQRKEEMLLEANTGLRRKLEE 173
                  45778899***********************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MGRGKVELKR IENKINRQVT FAKRRKGLLK KAYELSVLCD AEVALIVFST RGKLSEFSSG  60
PSMAKTLERY QRCTYGELGA SQSAEDEQSR YQDYLKLKTK VEALQRTQRH LLGEDLVHLG  120
MKELQQLENQ LDMSLKKIRC TKTQFMHVQI SELQRKEEML LEANTGLRRK LEESTAGLQR  180
SWNSNHQAAQ LEGFPGHLQF NNTLQIGYST PAVTNDEVNV ATSSEQSRRG FIPGWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-86MIKC_MADS family protein