PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013195.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 764aa MW: 82747.2 Da PI: 6.9096

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013195.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.5e-11	83	129	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h ++E+rRRdri +++Lr+l+Pk+ K++Ka+ L +++++k+L PCP013195.1 83 KSHRQAEKRRRDRISAQLATLRKLVPKS-----DKMDKAALLGSVIDHVKEL 129 79***********************8.....7**************99 PP
2	Myb_DNA-binding	51.5	2.3e-16	428	472	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+W t+Ed l+++v+q+G+ +W++I+ ++ gR++k+c++rw + PCP013195.1 428 GSWNTQEDATLIKLVAQHGPSNWSLISTGIP-GRSGKSCRLRWCNQ 472 89***************************.*********985 PP
3	Myb_DNA-binding	54.6	2.4e-17	480	522	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++++Ed ++++a++++G++ W+tIar ++ gRt++ +k++w++ PCP013195.1 480 KPFSPQEDSIIIQAHALHGNK-WATIARLLP-GRTDNAIKNHWNS 522 689****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence
MDHNCCYAGT GGLSWPQQYK SGAVPAAAAV SNESSSSFLV PWPPPPPHVS STNQFQFCGL 60 PPNSWSLTAA DGFEDDRDAS ASKSHRQAEK RRRDRISAQL ATLRKLVPKS DKMDKAALLG 120 SVIDHVKELK RKAVEVSEAF IVPTEVDEVT IDCDPAHGVT STTTSNSNIN RGNFLITASV 180 CCDDRPDLFS ELIQILKGLK LTALRAEMAS VGGRIKSVLV LCSKDGEEAV CLSTLKQSLK 240 LVLSKLAASP VAPNCRIRSK RQSFSNKLGS LTHWPINLDF RDFWCFVKGF AIDKAVMGNP 300 TNIFTNGKRS LNPCIMWPQA LGPPIRAGPL TWASLKPHCQ HGLEQIAGAI GSFLSPVHRA 360 LASPRVALSS CMSPPTPLPL FHRKVKTHSS NQNSPLSPIR IQISNLSLSS YDRMTMMGAM 420 SGEDRVTGSW NTQEDATLIK LVAQHGPSNW SLISTGIPGR SGKSCRLRWC NQLCPTVQHK 480 PFSPQEDSII IQAHALHGNK WATIARLLPG RTDNAIKNHW NSALRRRRRQ LAELSSSSSG 540 SDAAAALGEE PDLKRQCLRA SPEHESLKAG AGGEGVIVET SLTLSPPGEK AEKDVAVKSE 600 EEEHDHEAVD NDDDVEKCAV EMEETCLLTI MQRMIAQEVR NYIDSLRGDG GPTFGPQSEA 660 HQNDALTQAS MDSLSSKEAS VPAGGGGGGG AAQEKDDDGD DDGSEQVEKA LHLDGNIPSS 720 SDEFVKRVSS HAYDMRRHLQ QSFDSSSYDG TNSVQSCSCF YLLV

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence

MDHNCCYAGT GGLSWPQQYK SGAVPAAAAV SNESSSSFLV PWPPPPPHVS STNQFQFCGL  60
PPNSWSLTAA DGFEDDRDAS ASKSHRQAEK RRRDRISAQL ATLRKLVPKS DKMDKAALLG  120
SVIDHVKELK RKAVEVSEAF IVPTEVDEVT IDCDPAHGVT STTTSNSNIN RGNFLITASV  180
CCDDRPDLFS ELIQILKGLK LTALRAEMAS VGGRIKSVLV LCSKDGEEAV CLSTLKQSLK  240
LVLSKLAASP VAPNCRIRSK RQSFSNKLGS LTHWPINLDF RDFWCFVKGF AIDKAVMGNP  300
TNIFTNGKRS LNPCIMWPQA LGPPIRAGPL TWASLKPHCQ HGLEQIAGAI GSFLSPVHRA  360
LASPRVALSS CMSPPTPLPL FHRKVKTHSS NQNSPLSPIR IQISNLSLSS YDRMTMMGAM  420
SGEDRVTGSW NTQEDATLIK LVAQHGPSNW SLISTGIPGR SGKSCRLRWC NQLCPTVQHK  480
PFSPQEDSII IQAHALHGNK WATIARLLPG RTDNAIKNHW NSALRRRRRQ LAELSSSSSG  540
SDAAAALGEE PDLKRQCLRA SPEHESLKAG AGGEGVIVET SLTLSPPGEK AEKDVAVKSE  600
EEEHDHEAVD NDDDVEKCAV EMEETCLLTI MQRMIAQEVR NYIDSLRGDG GPTFGPQSEA  660
HQNDALTQAS MDSLSSKEAS VPAGGGGGGG AAQEKDDDGD DDGSEQVEKA LHLDGNIPSS  720
SDEFVKRVSS HAYDMRRHLQ QSFDSSSYDG TNSVQSCSCF YLLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	4e-44	MYB family protein