PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP013248.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family NF-YC
Protein Properties Length: 222aa    MW: 24843.5 Da    PI: 10.721
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP013248.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC43.19.2e-141152041099
        NF-YC  10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                  + +++++k  ++P+ r+++i+++++   +is +a  l+ ka e f+ ++   s   + + +r+++    +a++v++ + +dfl d vp++
  PCP013248.1 115 VADEEEVKAYTFPMERVRRIIRSEDSDLRISNDAVFLINKATEKFLEKFCEESHACCVKDRRKAIAYKHLATVVSKRKRYDFLSDYVPEK 204
                  5567899****************999999**********************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MATPKKDIPP KKTKEAKKPS TKSPPPKKTQ QTKKPTTAKA KTPEKKKPSN AKKSTNINKI  60
TSNGNARESD VEAVPSPSSE SRRGAEQNGG KITKTPTTKS KKGKEKGKRK REGEVADEEE  120
VKAYTFPMER VRRIIRSEDS DLRISNDAVF LINKATEKFL EKFCEESHAC CVKDRRKAIA  180
YKHLATVVSK RKRYDFLSDY VPEKVKAEDA LAKRKLAEAK AG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175193RRKAIAYKHLATVVSKRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-29NF-YC family protein