PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013352.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 251aa MW: 28251.7 Da PI: 4.8361

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013352.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.9	6.4e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+ G +W+++++ g++R++k+c++rw +yl PCP013352.1 14 KGPWTAEEDKKLVNFLLTRGQCCWRAVPKLAGLRRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	48.5	2.1e-15	73	111	7	47
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 E++l +d++++lG++ W++Ia+ ++ gRt++++k++w+++ PCP013352.1 73 AEEQLVIDLHARLGNR-WSKIAAGLP-GRTDNEIKNHWNTH 111 69************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MGRQPCCDKL GVKKGPWTAE EDKKLVNFLL TRGQCCWRAV PKLAGLRRCG KSCRLRWINY 60 LRPDLKRGLL NDAEEQLVID LHARLGNRWS KIAAGLPGRT DNEIKNHWNT HIKKKLVKMG 120 IDPITHEPLH KQVTTPQEMP CEASNQPANS DMNIQQINTN IPEHGICTNS DGNSASENSP 180 SNDSEPAEPN PNCSEEDDPL VSFILSDTFL EDLTWDFSTS SEYSSADNPT EENSLAWLMD 240 CKDFGVEDFE L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12350.1	1e-87	MYB family protein