PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP013543.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 306aa    MW: 34573.6 Da    PI: 5.1936
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP013543.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.6e-28958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  PCP013543.1  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                 79********************************************9997 PP
2K-box21.97.3e-0980149978
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                   + ++ e+lqqe+  L++++++ ++++R +  + L+  s  eL++ e+ L + l+++ ++K+ ll ++++
  PCP013543.1  80 HDLQNKEELQQEIGGLQQQLQMAEEQIRIYEPDPLKITSTVELESCEKSLMDTLTRVMQRKEYLLSNHLS 149
                  5668899**********************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK  60
RRIEDVFTRY INLPDQEREH DLQNKEELQQ EIGGLQQQLQ MAEEQIRIYE PDPLKITSTV  120
ELESCEKSLM DTLTRVMQRK EYLLSNHLSS YDSSGIQQVL PGSFENEVAG WLSGAGHNQA  180
QIYDASAPLE HQLRNLSSTL YDPFSQGQSS NADPSTMGQC HVSVTNDSDG ELPLWHQAYT  240
TSSGHHSTLI PPTLLPQYQN SVVGSNMPEI MPHEQVEIPV GNSSLQPYNE VADYNHENKV  300
PQLNGH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-94MIKC_MADS family protein