PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013666.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 1222aa MW: 137149 Da PI: 5.2485

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013666.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.9	4.9e-50	848	983	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 + pGfrFhPtdeelv +yLk+k ++ l++ e ik+vdiyk++PwdLp+ ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d+ PCP013666.1 848 MLPGFRFHPTDEELVGFYLKRKFQQGVLPI-ELIKQVDIYKYDPWDLPNcissvqaeLASTGEKEWYFYCPRDRKYKNSTRPNRVTGAGFWKATGTDR 944 579*************************.89***********7577666643344889****************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl PCP013666.1 945 PVYSSeGSKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 983 956677*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1222 aa Download sequence
MGFSGGGFYS YTPLSPRFFT LSVSSLLLAL FRFFSKFFLR VSFVNGDSSW MNNYCCSGPV 60 SEETDQMVSN NNLVETEALP GKSDSCCPSS ASEETNQMVS NNPAEPEALP EKADSEISKS 120 HGDSEFGEAD DGEASKPSFV FKFEYQTKEI LSRSNRECKF MADKFNLFKE EPEFTSSSSR 180 KYEFKAEESV SCFLEEAKVA TFTVEEGGDH EQITHEFADC EKVDSHEVKF LSEKDFVASD 240 YECASIGSPS VGFLSVADFG ERNDRLENFD MGHESDCFDD EDEDINEQIQ ESEELYSSSS 300 PEGFSSKDEK PIEGFENAET PQVRSLIPNA SEDSNTLETL WEHQDLIEQL KMELKKVRAT 360 GLPTILEESE SPNMDDLKPW KIDEKVHQGD RMGELQKFHR SYRERMRKFD ILNYQKLYAI 420 GFLQSKDPLQ SFPSSKSSAP AIPSFLSQNF WGCKLKKDSD SDPMVKFIRE LHSELEVVYV 480 GQLCLSWEIL QWQYEKAVKL WESAPSGIGS YNAVAGEFQQ FQVHLHRFVE NECYQGPRVE 540 NYVKNRCITR NLLQVPVIRG DNLKERKKAR RKGKDDGAIT SDILVEILEE SIRTIWRFIR 600 ADKHANCTLA CRKRRPGEEL EESDLKLYTE IQTDLHNKKM KLREILRSGN CILKRLKKHE 660 DVGTDHLYFF SQVDMKLVAR VLNMSNITTE QLACNGGGGG DGSIDGGNGG SGGGGGNGGG 720 SGSDCADNDD SGGGCGYGGG SSDGGDDSGG GGKLIYQTTK KRASGPKCPV TGKRIQGIPH 780 LRPAEYKRSR LSRNRRTVNR AYGGVLSGGA VRERIIRAFL VEEQKIVKKR RKRSMEQKNE 840 MEKVDDVMLP GFRFHPTDEE LVGFYLKRKF QQGVLPIELI KQVDIYKYDP WDLPNCISSV 900 QAELASTGEK EWYFYCPRDR KYKNSTRPNR VTGAGFWKAT GTDRPVYSSE GSKCIGLKKS 960 LVFYRGRAAK GIKTDWMMHE FRLPSLSNSV PPKKLLDKSL PANDSWAICR IFKKTNSMAQ 1020 RALSHSWDSQ FPEPTAAGLF TQQFSSEDMS CTTDMGSTMQ FWNNNDLQQA SNTNYSSFDT 1080 LPYKPINPTV SKPSMFDGEF PNSFMFSPAE LSGTMNPALI DDLSNPAGSI DFDGSQQQFS 1140 RLFDQFAATD QMQGNTGTSE NEGGFRKNMN SSSNSTSQWG SSSIRSIGFP FSLASDDESW 1200 KPTLPSYSPP YPSSYSTNKC YT

Sequence ? help Back to Top

Protein Sequence Length: 1222 aa Download sequence

MGFSGGGFYS YTPLSPRFFT LSVSSLLLAL FRFFSKFFLR VSFVNGDSSW MNNYCCSGPV  60
SEETDQMVSN NNLVETEALP GKSDSCCPSS ASEETNQMVS NNPAEPEALP EKADSEISKS  120
HGDSEFGEAD DGEASKPSFV FKFEYQTKEI LSRSNRECKF MADKFNLFKE EPEFTSSSSR  180
KYEFKAEESV SCFLEEAKVA TFTVEEGGDH EQITHEFADC EKVDSHEVKF LSEKDFVASD  240
YECASIGSPS VGFLSVADFG ERNDRLENFD MGHESDCFDD EDEDINEQIQ ESEELYSSSS  300
PEGFSSKDEK PIEGFENAET PQVRSLIPNA SEDSNTLETL WEHQDLIEQL KMELKKVRAT  360
GLPTILEESE SPNMDDLKPW KIDEKVHQGD RMGELQKFHR SYRERMRKFD ILNYQKLYAI  420
GFLQSKDPLQ SFPSSKSSAP AIPSFLSQNF WGCKLKKDSD SDPMVKFIRE LHSELEVVYV  480
GQLCLSWEIL QWQYEKAVKL WESAPSGIGS YNAVAGEFQQ FQVHLHRFVE NECYQGPRVE  540
NYVKNRCITR NLLQVPVIRG DNLKERKKAR RKGKDDGAIT SDILVEILEE SIRTIWRFIR  600
ADKHANCTLA CRKRRPGEEL EESDLKLYTE IQTDLHNKKM KLREILRSGN CILKRLKKHE  660
DVGTDHLYFF SQVDMKLVAR VLNMSNITTE QLACNGGGGG DGSIDGGNGG SGGGGGNGGG  720
SGSDCADNDD SGGGCGYGGG SSDGGDDSGG GGKLIYQTTK KRASGPKCPV TGKRIQGIPH  780
LRPAEYKRSR LSRNRRTVNR AYGGVLSGGA VRERIIRAFL VEEQKIVKKR RKRSMEQKNE  840
MEKVDDVMLP GFRFHPTDEE LVGFYLKRKF QQGVLPIELI KQVDIYKYDP WDLPNCISSV  900
QAELASTGEK EWYFYCPRDR KYKNSTRPNR VTGAGFWKAT GTDRPVYSSE GSKCIGLKKS  960
LVFYRGRAAK GIKTDWMMHE FRLPSLSNSV PPKKLLDKSL PANDSWAICR IFKKTNSMAQ  1020
RALSHSWDSQ FPEPTAAGLF TQQFSSEDMS CTTDMGSTMQ FWNNNDLQQA SNTNYSSFDT  1080
LPYKPINPTV SKPSMFDGEF PNSFMFSPAE LSGTMNPALI DDLSNPAGSI DFDGSQQQFS  1140
RLFDQFAATD QMQGNTGTSE NEGGFRKNMN SSSNSTSQWG SSSIRSIGFP FSLASDDESW  1200
KPTLPSYSPP YPSSYSTNKC YT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	612	641	RKRRPGEELEESDLKLYTEIQTDLHNKKMK
2	828	832	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39820.1	2e-91	NAC family protein