PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013718.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 530aa MW: 57134.6 Da PI: 8.1963

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013718.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.7e-09	341	388	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq PCP013718.1 341 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 388 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MEKGSLAKPT WNPSGFSMEM QSNELNCAPQ QLPNSLFNAN WDNSLDQTDP FESALSSIVS 60 SPIAAAGKGG EGGDMIRELI GRLGSISNSG EISPHSYISS NYNNSSTNTS CYSTPLNSSQ 120 RGSLPIENLA QFQADPGFVE RAARFSCFGA GAGGNFGGQF NLNEAELAYR SMARIDSRKL 180 SRVSSNQSLK VAAGSQLAAQ ETNKSSPLDG NSAPDKKFIS RFSRASTPEN GELGDSREGS 240 SVSQQIPGGD LSVKAEIVTN SRKRKSAARG KAKASSSSPS VKDAKVVAEK EEPNAKKSKN 300 DEASGKEKET SKAKTKANSE TPEAPKDYIH VRARRGQATD SHSLAERVRR EKISERMKFL 360 QDLVPGCNKV TGKAVMLDEI INYVQSLQCQ VEFLSMKLST VNPRMDLNME ALLSKDIIQS 420 RGSLQNALYQ LDSSVPSFPF GYQPQQLPPL HSSSISSATD TQFPANPLSS ALRQSHGMQL 480 PAFDRFGEAA SQMPTLFEDD LQSVVQMGFG QIQQESFHGS GASARMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MEKGSLAKPT WNPSGFSMEM QSNELNCAPQ QLPNSLFNAN WDNSLDQTDP FESALSSIVS  60
SPIAAAGKGG EGGDMIRELI GRLGSISNSG EISPHSYISS NYNNSSTNTS CYSTPLNSSQ  120
RGSLPIENLA QFQADPGFVE RAARFSCFGA GAGGNFGGQF NLNEAELAYR SMARIDSRKL  180
SRVSSNQSLK VAAGSQLAAQ ETNKSSPLDG NSAPDKKFIS RFSRASTPEN GELGDSREGS  240
SVSQQIPGGD LSVKAEIVTN SRKRKSAARG KAKASSSSPS VKDAKVVAEK EEPNAKKSKN  300
DEASGKEKET SKAKTKANSE TPEAPKDYIH VRARRGQATD SHSLAERVRR EKISERMKFL  360
QDLVPGCNKV TGKAVMLDEI INYVQSLQCQ VEFLSMKLST VNPRMDLNME ALLSKDIIQS  420
RGSLQNALYQ LDSSVPSFPF GYQPQQLPPL HSSSISSATD TQFPANPLSS ALRQSHGMQL  480
PAFDRFGEAA SQMPTLFEDD LQSVVQMGFG QIQQESFHGS GASARMKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	266	SRKRKS
2	262	299	RKRKSAARGKAKASSSSPSVKDAKVVAEKEEPNAKKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-65	bHLH family protein