PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013786.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 725aa MW: 81585.5 Da PI: 8.2799

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013786.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.9	8.2e-12	394	444	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + +R+ ++k++w++ PCP013786.1 394 KQKWTAEEESALKAGVIKHGAGKWRTILKDPEfsgvlYTRSNVDLKDKWRN 444 79************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MKYGKSHPKS QGIRKETFAD YEDLMTVFGD GTAKGNNLIG LGNDTDATTY RVEESRPVRV 60 DEFPPFDENV EQLDPLFQTP SYASSFLDAN FEAPAAALVQ KLLPRKRSRP ESEPKLNGTT 120 SHIFLMEKVF VGMDSIAAIA TEIQGIHCIM AKREKDREKK EMEKKEEEKN NNVWDASKET 180 PNLDARSRYK ARMEGSAHDS KLLHDAVSRR NGLKMPEGKF FLVDCGFANR RQILAPFRGV 240 RYHLQDFAGN DRDPVNANEL FNLRHASLRN VVERIFGVFK SRFTIFKSAP PFPIKTQAEL 300 VLACAGLHNF LRKECRSDEF PIELEDDESE DEENDDELGN QTQEQQRQIA NAWRAGISTN 360 MWTDATPISG NFPYRFILIL WRSSSVLPHM GAPKQKWTAE EESALKAGVI KHGAGKWRTI 420 LKDPEFSGVL YTRSNVDLKD KWRNMSVMAS GWGSREKAKT ALRRIHPISK QDDSSIPLST 480 TVQSDDEMMD AKPISVSSET QHISGPRKSI VRLDNLIMEA ITRLKEPGGS NKTTIAGYIE 540 DEYLAPQDFK RLLSEKLKYL TASRKLIKVK RRYRIAPTPA LSEKRRNTSM YPFEGRQMAS 600 AFEGRQMASA FEGRRMASPF EGRPMLSPFE GRYMASPKLE NDEGTILMKA QIDLELAKMR 660 TMTPREATLA AAQAVKEAEA AIAEAEEAAR EAEAAEADAE AAQAFAEAAM KPLKGGNAMK 720 TVRFT

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MKYGKSHPKS QGIRKETFAD YEDLMTVFGD GTAKGNNLIG LGNDTDATTY RVEESRPVRV  60
DEFPPFDENV EQLDPLFQTP SYASSFLDAN FEAPAAALVQ KLLPRKRSRP ESEPKLNGTT  120
SHIFLMEKVF VGMDSIAAIA TEIQGIHCIM AKREKDREKK EMEKKEEEKN NNVWDASKET  180
PNLDARSRYK ARMEGSAHDS KLLHDAVSRR NGLKMPEGKF FLVDCGFANR RQILAPFRGV  240
RYHLQDFAGN DRDPVNANEL FNLRHASLRN VVERIFGVFK SRFTIFKSAP PFPIKTQAEL  300
VLACAGLHNF LRKECRSDEF PIELEDDESE DEENDDELGN QTQEQQRQIA NAWRAGISTN  360
MWTDATPISG NFPYRFILIL WRSSSVLPHM GAPKQKWTAE EESALKAGVI KHGAGKWRTI  420
LKDPEFSGVL YTRSNVDLKD KWRNMSVMAS GWGSREKAKT ALRRIHPISK QDDSSIPLST  480
TVQSDDEMMD AKPISVSSET QHISGPRKSI VRLDNLIMEA ITRLKEPGGS NKTTIAGYIE  540
DEYLAPQDFK RLLSEKLKYL TASRKLIKVK RRYRIAPTPA LSEKRRNTSM YPFEGRQMAS  600
AFEGRQMASA FEGRRMASPF EGRPMLSPFE GRYMASPKLE NDEGTILMKA QIDLELAKMR  660
TMTPREATLA AAQAVKEAEA AIAEAEEAAR EAEAAEADAE AAQAFAEAAM KPLKGGNAMK  720
TVRFT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.1	3e-88	MYB_related family protein