PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013787.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 1019aa MW: 114823 Da PI: 6.9411

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013787.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.4	5.9e-12	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + +R+ ++k++w++ PCP013787.1 5 KQKWTPEEESALKAGVIKHGAGKWRTILKDPEfsgvlYTRSNVDLKDKWRN 55 79************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1019 aa Download sequence
MGAPKQKWTP EEESALKAGV IKHGAGKWRT ILKDPEFSGV LYTRSNVDLK DKWRNMSVMA 60 NGWGSREKAK TALRRMHPIS KQDENSMPFS TVVQSDDEMM DAKPISVSSE TQQISGPRKS 120 IFLRTNNSCA IQQVDLFVNV IHDILKGSDW LDNLIMEAIT RLKEPGGSNK TTIAAYIEDE 180 YWPPQDFKRL LSEKLKFLTA SRKLIKVKRR YRIAPTPALS EKRRNTSTYP FEGRQVASAF 240 EGRRMASPFE GRPLVSPFEG RYMASPKFDN DEATILMKAQ IDLELAKMRT MTPREATLAA 300 AQAVKEAEAA IAEAEEAARE AEAAEADAEA AQAFAEAAMK TLKGRNASKT FLFLAMDEDL 360 SDKESLLARI HQLENERDEL RKDIEQLCMQ QAGPSYLLVA TKMHFQRTAG LEQEIENLKK 420 KLAACTRDYV NLQEELSEAY RIKGQLADLH SAEVAKNVEA EKQLKFFQGC VAAAFAERDH 480 SIMEAEKARE KEDLMSNKLC DIEKRLEELT ADFSKQKKLS DKLQSDLAMQ EEQIEAFKKV 540 IDKFYEIRQQ SPEGCEDTSW DRKCACLLHD PAEWWCFKDA STSKYISALE EELERMRKSV 600 DNLQNRQRMG LEIENHLKRR VGELEKKKIL TYKMIRHEIT ELHHYHSQRR VLIMNLLDEG 660 KASIKTVIDA IKENSRQIDA TRLEKVGPSP RDIKHDKYEG QEVHENTDAD PQLVSKNSGP 720 DSSEFVAVRG NDSSEVLAQA LQDKVSTLLL LSQQEERHLL DRNVNAALER KIEELHRNLQ 780 QFGGVACNLL VTNEKVRALM EFAQLKQDYH QLKERMGQGT NRGNLAAEIG ERKVVTRERD 840 GRLKSLLKKT YLSRWAGNVD FRGHEAAGGQ NVEGNLSGKG SNSMEFARMK IEIATLRESM 900 GSMEHLTTTV HRLRLSLSKA KELVTSGSTA VASLSEAVNG IINEAKLVKT ALSSSLPISW 960 SADEDDGVNR QSVSNEPGHA YGKASHEKID SVYAAGFEMV ELLILAAQIL KDNTGKTGS

Sequence ? help Back to Top

Protein Sequence Length: 1019 aa Download sequence

MGAPKQKWTP EEESALKAGV IKHGAGKWRT ILKDPEFSGV LYTRSNVDLK DKWRNMSVMA  60
NGWGSREKAK TALRRMHPIS KQDENSMPFS TVVQSDDEMM DAKPISVSSE TQQISGPRKS  120
IFLRTNNSCA IQQVDLFVNV IHDILKGSDW LDNLIMEAIT RLKEPGGSNK TTIAAYIEDE  180
YWPPQDFKRL LSEKLKFLTA SRKLIKVKRR YRIAPTPALS EKRRNTSTYP FEGRQVASAF  240
EGRRMASPFE GRPLVSPFEG RYMASPKFDN DEATILMKAQ IDLELAKMRT MTPREATLAA  300
AQAVKEAEAA IAEAEEAARE AEAAEADAEA AQAFAEAAMK TLKGRNASKT FLFLAMDEDL  360
SDKESLLARI HQLENERDEL RKDIEQLCMQ QAGPSYLLVA TKMHFQRTAG LEQEIENLKK  420
KLAACTRDYV NLQEELSEAY RIKGQLADLH SAEVAKNVEA EKQLKFFQGC VAAAFAERDH  480
SIMEAEKARE KEDLMSNKLC DIEKRLEELT ADFSKQKKLS DKLQSDLAMQ EEQIEAFKKV  540
IDKFYEIRQQ SPEGCEDTSW DRKCACLLHD PAEWWCFKDA STSKYISALE EELERMRKSV  600
DNLQNRQRMG LEIENHLKRR VGELEKKKIL TYKMIRHEIT ELHHYHSQRR VLIMNLLDEG  660
KASIKTVIDA IKENSRQIDA TRLEKVGPSP RDIKHDKYEG QEVHENTDAD PQLVSKNSGP  720
DSSEFVAVRG NDSSEVLAQA LQDKVSTLLL LSQQEERHLL DRNVNAALER KIEELHRNLQ  780
QFGGVACNLL VTNEKVRALM EFAQLKQDYH QLKERMGQGT NRGNLAAEIG ERKVVTRERD  840
GRLKSLLKKT YLSRWAGNVD FRGHEAAGGQ NVEGNLSGKG SNSMEFARMK IEIATLRESM  900
GSMEHLTTTV HRLRLSLSKA KELVTSGSTA VASLSEAVNG IINEAKLVKT ALSSSLPISW  960
SADEDDGVNR QSVSNEPGHA YGKASHEKID SVYAAGFEMV ELLILAAQIL KDNTGKTGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.1	8e-83	MYB_related family protein