PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP014552.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27792.4 Da    PI: 9.6187
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP014552.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.3e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+t k++ey+s
  PCP014552.1  9 KLIENQTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTSKMHEYIS 59
                 569**********************************************86 PP
2K-box85.69.9e-2971164194
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                  yqk+ g++l+ +++es++  l kLk+ +++L+re+R++lG dL+ Ls+ +L++Le+++++sl  iR++K++++++q+e+++kk k+l+e+  ++
  PCP014552.1  71 YQKTMGVDLWRTHYESMKDTLWKLKEINNKLRREIRQRLGHDLNGLSYDDLRSLEDKMQSSLDAIRERKYHVIKTQTETTKKKVKNLEERRGNM 164
                  7899999*********************************************************************************987665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MGRGKIEIKL IENQTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TSKMHEYISP  60
TTTTKRMYDD YQKTMGVDLW RTHYESMKDT LWKLKEINNK LRREIRQRLG HDLNGLSYDD  120
LRSLEDKMQS SLDAIRERKY HVIKTQTETT KKKVKNLEER RGNMLHGYEA ASENPQYCYV  180
DNEEDYESAL ALANGANNLY TFQLHRNSDQ LHHPNLHHHR GSSLGSSITH LHDLRLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-65MIKC_MADS family protein