PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP014697.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 236aa MW: 27456.5 Da PI: 4.9297

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP014697.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.4	6.6e-20	37	88	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq+ Le+ Fe ++++ +++ +LA++lgL+ rqV +WFqNrRa++k PCP014697.1 37 RRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWK 88 48*************************************************9 PP
2	HD-ZIP_I/II	120.4	9.6e-39	36	126	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+s+eq++lLE+ Fe+++kLep+rKv+lareLglqprqva+WFqnrRAR+k+kq+E+d ++L++ yd l+++ e+L++e+++L +l++ PCP014697.1 36 TRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWKSKQMERDLRSLREDYDMLASRFESLKEEKQSLLMQLQK 126 69************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MERRKEECYE EENLDYVSGL EPQFATKRKK NKGTNTRRFS DEQISLLESI FEADSKLEPR 60 RKVQLARELG LQPRQVAIWF QNRRARWKSK QMERDLRSLR EDYDMLASRF ESLKEEKQSL 120 LMQLQKLNDL VGTSRDGAPT EDSLVNQTVD GSSYKEGNCE TTAQVRLEEE LEQRGVIDSH 180 TSNDFGGEYG DERHDELPKI GPLDASATPQ ELHRLDSGSI LFDPSRCNLH WLNFWA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	38	KRKKNKGTNTRR
2	83	91	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	1e-40	HD-ZIP family protein