PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP014847.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 721aa MW: 79666.2 Da PI: 10.4922

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP014847.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.3	9.6e-10	10	60	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrw 44 ++W t E++llv+av+++G+ +W+++a ++g + +++ +c++++ PCP014847.1 10 QPWGTLEELLLVCAVNRHGTQSWDSVALEVGsrcsptatTLLSADNCRDKF 60 79*****************************88887777777777787776 PP

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence
MARERGTSAQ PWGTLEELLL VCAVNRHGTQ SWDSVALEVG SRCSPTATTL LSADNCRDKF 60 ADIKRRFVSE DDDDGSSGSL GAMVDELRRL RVEELRREVR RRDVSIVSLE LKVKRLVEER 120 ERSLKEDAGA NRPSKDLKRR GGDQRDGSRE NLAGKMNSGE DFGSDFNSDE RENRSFNESN 180 STSQRGDAKG NGAAEKLAEA EQEEEPRTDG NEPDPIRAKI RSEPDRDCSV NGKVADDDDE 240 DNQNNNKKGG DDTAKASRLG KSSELWESGG ESKREGKRGG GGAAASRQQN SDVQSSASLS 300 KRKRHRGRGG EGGGGSRSRS RSSSGEEAEG DEVSPATSKG VKQLKLVKSE PLMKVLKIIC 360 SHRLGSVFER RLRSQESERY KSLIRQHMDL HVIQSKINKG LYTEDCIPFF RDLLLLFNNA 420 VVFFRKNSPE HNAAQELRSI VLKEMNDQLP NPQPATGTVT SNVPKIETKA PKIEPDAFEK 480 PTKSSIVVCG KRGSVNALSE GGAKSRKGDK VEEKAKAANE KKADGAASVK VEDKGIRRRR 540 TQERGGRRGT STRGRNAAKP TKPHEYGINE LSSHDGLEAL EAEKEKKENR RKKQGAARFL 600 KRMKQNSPST EVKKETSDGS EDDSEESEDE KKKKKPTMRS RKKPEVERNE RVTRSSTGSG 660 GGRGGGRRCQ ESNGRGRRGV GRPPKRPETA AAEAGRRKRG RENGEADQVG STGRRRKRTR 720 R

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence

MARERGTSAQ PWGTLEELLL VCAVNRHGTQ SWDSVALEVG SRCSPTATTL LSADNCRDKF  60
ADIKRRFVSE DDDDGSSGSL GAMVDELRRL RVEELRREVR RRDVSIVSLE LKVKRLVEER  120
ERSLKEDAGA NRPSKDLKRR GGDQRDGSRE NLAGKMNSGE DFGSDFNSDE RENRSFNESN  180
STSQRGDAKG NGAAEKLAEA EQEEEPRTDG NEPDPIRAKI RSEPDRDCSV NGKVADDDDE  240
DNQNNNKKGG DDTAKASRLG KSSELWESGG ESKREGKRGG GGAAASRQQN SDVQSSASLS  300
KRKRHRGRGG EGGGGSRSRS RSSSGEEAEG DEVSPATSKG VKQLKLVKSE PLMKVLKIIC  360
SHRLGSVFER RLRSQESERY KSLIRQHMDL HVIQSKINKG LYTEDCIPFF RDLLLLFNNA  420
VVFFRKNSPE HNAAQELRSI VLKEMNDQLP NPQPATGTVT SNVPKIETKA PKIEPDAFEK  480
PTKSSIVVCG KRGSVNALSE GGAKSRKGDK VEEKAKAANE KKADGAASVK VEDKGIRRRR  540
TQERGGRRGT STRGRNAAKP TKPHEYGINE LSSHDGLEAL EAEKEKKENR RKKQGAARFL  600
KRMKQNSPST EVKKETSDGS EDDSEESEDE KKKKKPTMRS RKKPEVERNE RVTRSSTGSG  660
GGRGGGRRCQ ESNGRGRRGV GRPPKRPETA AAEAGRRKRG RENGEADQVG STGRRRKRTR  720
R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	631	643	KKKKKPTMRSRKK
2	631	644	KKKKKPTMRSRKKP
3	696	718	RRKRGRENGEADQVGSTGRRRKR
4	697	719	RRKRGRENGEADQVGSTGRRRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60110.1	4e-27	MYB_related family protein