PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP014970.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 373aa MW: 39978.5 Da PI: 7.1945

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP014970.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.2e-18	46	93	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t ++ g+ R++k+c++rw +yl PCP014970.1 46 RGPWTPEEDELLANYIKKEGEGRWRTLPKQAGLLRCGKSCRLRWMNYL 93 89****************************99**********97 PP
2	Myb_DNA-binding	46.7	7.4e-15	104	144	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l PCP014970.1 104 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 144 89*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MRNPPSSSKA TAAASATMTT ASPSSSKAGI AGGSKTPCCV KVGLKRGPWT PEEDELLANY 60 IKKEGEGRWR TLPKQAGLLR CGKSCRLRWM NYLRPSVKRG QIAPDEEDLI LRLHRLLGNR 120 WSLIAGRIPG RTDNEIKNYW NTHLSKKLIS QGIDPRTHKP LNPDHHSAAA DADVDNTNKS 180 VAAAVSFKAN TRFSNPNPSP PPSDRLVHQG ADPSINGNDG NIALDHDLGT IVHSCANLIT 240 SINNPDASSS AAAMGTLSLR TNNNSHAGVL LGGGGNEEDE DINCCADDVF SSFLNSLINE 300 DPFAVQHQLQ QQVLHNGNVS THAAGAGSDH VPLISMTSAS TMTPSTFGWD SAVLMSSAFI 360 QNDHQRVTDQ TEQ

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MRNPPSSSKA TAAASATMTT ASPSSSKAGI AGGSKTPCCV KVGLKRGPWT PEEDELLANY  60
IKKEGEGRWR TLPKQAGLLR CGKSCRLRWM NYLRPSVKRG QIAPDEEDLI LRLHRLLGNR  120
WSLIAGRIPG RTDNEIKNYW NTHLSKKLIS QGIDPRTHKP LNPDHHSAAA DADVDNTNKS  180
VAAAVSFKAN TRFSNPNPSP PPSDRLVHQG ADPSINGNDG NIALDHDLGT IVHSCANLIT  240
SINNPDASSS AAAMGTLSLR TNNNSHAGVL LGGGGNEEDE DINCCADDVF SSFLNSLINE  300
DPFAVQHQLQ QQVLHNGNVS THAAGAGSDH VPLISMTSAS TMTPSTFGWD SAVLMSSAFI  360
QNDHQRVTDQ TEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	3e-80	MYB family protein