PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP015302.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 546aa MW: 58789.4 Da PI: 6.0092

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP015302.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.5	1.6e-05	374	411	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L PCP015302.1 374 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 411 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MAEEFQARIC GGNSWWSSSR HVLAASPCSV GFNDHMGGFG YPNDMVDIKA TRSSCGEINN 60 SVSDDHDGGD HSNSIANFDQ YQDVQKPDHD STLQMIGFGL SSSLSSTPSD FNQALLLRSG 120 SGRGESNFHN SMLEEDMGMN TKLNTGALGD EESSSLINVF KPMNQDFSLD QLGSPSSSGF 180 PISSSSSAAN SYGFSSALML QTLFDSEPAP QTQPQQSVFN NNQFSNGSLL SPSPTSNCWP 240 PRYSPNSCLR PSALPKQLQP GVGGGGSGSL HFSNNISTPF WNAPAPAALN QDNTIRSSND 300 LFSSSQAQYT TPSLSPFHEK KSNSNNFTTK ANTNGDVQDS SSSVVKKSSS SACEPVFKRA 360 RIETPSPLPT FKVRKEKLGD RITALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVSVLST 420 PYMKNGAPMQ QQQGTDKMEE ASEGAQQDLQ SLGLCLVPIS STFPVANETT ADFWTPSFGA 480 TFRIKNLIFD SRIKNLRPGG ISDVAKKLVK IGRCASYMIA YKLLTLVSVL LAATASVERV 540 FSAIML

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MAEEFQARIC GGNSWWSSSR HVLAASPCSV GFNDHMGGFG YPNDMVDIKA TRSSCGEINN  60
SVSDDHDGGD HSNSIANFDQ YQDVQKPDHD STLQMIGFGL SSSLSSTPSD FNQALLLRSG  120
SGRGESNFHN SMLEEDMGMN TKLNTGALGD EESSSLINVF KPMNQDFSLD QLGSPSSSGF  180
PISSSSSAAN SYGFSSALML QTLFDSEPAP QTQPQQSVFN NNQFSNGSLL SPSPTSNCWP  240
PRYSPNSCLR PSALPKQLQP GVGGGGSGSL HFSNNISTPF WNAPAPAALN QDNTIRSSND  300
LFSSSQAQYT TPSLSPFHEK KSNSNNFTTK ANTNGDVQDS SSSVVKKSSS SACEPVFKRA  360
RIETPSPLPT FKVRKEKLGD RITALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVSVLST  420
PYMKNGAPMQ QQQGTDKMEE ASEGAQQDLQ SLGLCLVPIS STFPVANETT ADFWTPSFGA  480
TFRIKNLIFD SRIKNLRPGG ISDVAKKLVK IGRCASYMIA YKLLTLVSVL LAATASVERV  540
FSAIML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	1e-52	bHLH family protein