PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP015511.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 243aa MW: 27532.1 Da PI: 7.9323

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP015511.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.3e-18	91	145	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F++++++++ +++ LA++l+L+ rqV vWFqNrRa+ k PCP015511.1 91 RKKLRLTKEQSTLLEESFNRHNTLNQVQKQSLAEQLNLKPRQVEVWFQNRRARTK 145 678899***********************************************98 PP
2	HD-ZIP_I/II	118.5	3.8e-38	91	179	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++++L++ +K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL++ PCP015511.1 91 RKKLRLTKEQSTLLEESFNRHNTLNQVQKQSLAEQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLSDENRRLKKELQELKS 179 69*************************************************************************************93 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MGDVEEACNT KLQLGPGVCE YASRQEKKDN PLVCLDLSFA LCPKQEVPNL DDHIANGSSV 60 RTMDEDEESY ERSIDHTNNK SVIMNNKNGV RKKLRLTKEQ STLLEESFNR HNTLNQVQKQ 120 SLAEQLNLKP RQVEVWFQNR RARTKLKQTE VDCEFLKKCC ESLSDENRRL KKELQELKSL 180 NANGTSPLYI QIPKATMPPV CPSCEKMVKA HENNPAAAKN AEDLNVVRKS SNNKLQGGFD 240 GTN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	148	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-54	HD-ZIP family protein