PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP015652.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 243aa    MW: 26322.9 Da    PI: 8.1614
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP015652.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.85.3e-312104198
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q+++e
  PCP015652.1   2 SCNGCRVLRKGCSESCMLRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRPVLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVE 99 
                  6************************************************************************************************9 PP

       DUF260  94 lallk 98 
                  ++ll+
  PCP015652.1 100 TVLLG 104
                  98765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MSCNGCRVLR KGCSESCMLR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPDSQR  60
PVLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLLGGTLRPI PELLGGRSTP  120
DEASEADVGG VINCTDMWRL RDPSHNSGSS SRSARASSPK RKRSTADDES STKLLQHQAD  180
LDLRLTPTLS FKPKPKPETR RPGTPSMNSE ESGVTTCFES GLADHHPSSY AVGPERKLLN  240
LFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.14e-83LBD family protein