PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP015740.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 1021aa MW: 112825 Da PI: 7.1869

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP015740.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.2	3.1e-40	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv ++ qrfCqqCsrfh l+efDe++rsCrrrLa+hn+rrrk+++ PCP015740.1 148 VCQVEDCKADLSDAKDYHRRHKVCDMHSKATKALVGNVLQRFCQQCSRFHVLQEFDEGRRSCRRRLAGHNRRRRKTHP 225 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1021 aa Download sequence
MEAFGGGSRK FYSPTVSDLK AVGKKSLEWD LNDWQWDGDL FTASPLNAAP SDCRSRQLFP 60 LGPPETPSTA GLSNTSSSGS DDICPGNEKG KRELEKRRRD SIVENEELNN EVGCLNLKLG 120 EQAYPIMEGD VQTGKKTKIV GTTLNRAVCQ VEDCKADLSD AKDYHRRHKV CDMHSKATKA 180 LVGNVLQRFC QQCSRFHVLQ EFDEGRRSCR RRLAGHNRRR RKTHPDAVVN EGSWNDERGS 240 SYLLISLLRI LSNIHSNSSD QTKDQDLLSH LLKSLANLSG TVDGRNMSAL LTASQGLLNG 300 GTSTQTAQKV LDTVSNGCEP SKPSVSASKM NDYVNREDPS RPMQQCSTVP ASDFRRISSV 360 DADHGGLQVV SGVNATKPFP SIDRVPSTSV APEATTGRIQ LNGIDLNNTY DDSQDYLASL 420 GKSQSPVNSG TVPHGFPLWM RQDLQKSSPP QTSGTSYSTS SSSSGEVQSR TDRIVFKLFG 480 KDPNDLPIVL RSQILDWLSH SPTDIESYIR PGCVILTVYL RLEKSTWEEL CRNLGSILKR 540 LLHAANDPFW TTGWVYTRVQ HFVAFTYNGH VVLDTPLLLK NNKNCRISCI KPIAVSLSQR 600 TEIAVKGFNL SCATTRLLCA LEGKYLVQET CYDLVDGADT TIENDQLQCL RFSCSIPNVT 660 GRGFIEVEDH GLSSSFFPFI VAEQEVCSEI CMLEGAIEGA ETADDILAEP EKLEAKNQAM 720 DFINELGWLL HRGHTKFRLG HMDPNLDLFP FRRFRLLLEF SMDHDWCAVV KKLLGILLEG 780 TVDAGEHPSI ELALLDMSLL HRAVRRKCRP MVELLLSFVL DKELGKTGSE DGQQVGGDGN 840 KFLFKPDAVG LMGLTPLHVA ASTDGCENIL DALTDDPGKV GIKAWGNARD STGLTPNDYA 900 CQRSCYTYIQ IVQRKISKKH ESRHVVLDIP GVILDSSSKK KQLDGHKSSK VSSLETERID 960 MKAMQAHCKL CEMKLAYGNT RSLVYRPAML SMVAIAAVCV CAALLFKSSP VTWERLKYGT 1020 S

Sequence ? help Back to Top

Protein Sequence Length: 1021 aa Download sequence

MEAFGGGSRK FYSPTVSDLK AVGKKSLEWD LNDWQWDGDL FTASPLNAAP SDCRSRQLFP  60
LGPPETPSTA GLSNTSSSGS DDICPGNEKG KRELEKRRRD SIVENEELNN EVGCLNLKLG  120
EQAYPIMEGD VQTGKKTKIV GTTLNRAVCQ VEDCKADLSD AKDYHRRHKV CDMHSKATKA  180
LVGNVLQRFC QQCSRFHVLQ EFDEGRRSCR RRLAGHNRRR RKTHPDAVVN EGSWNDERGS  240
SYLLISLLRI LSNIHSNSSD QTKDQDLLSH LLKSLANLSG TVDGRNMSAL LTASQGLLNG  300
GTSTQTAQKV LDTVSNGCEP SKPSVSASKM NDYVNREDPS RPMQQCSTVP ASDFRRISSV  360
DADHGGLQVV SGVNATKPFP SIDRVPSTSV APEATTGRIQ LNGIDLNNTY DDSQDYLASL  420
GKSQSPVNSG TVPHGFPLWM RQDLQKSSPP QTSGTSYSTS SSSSGEVQSR TDRIVFKLFG  480
KDPNDLPIVL RSQILDWLSH SPTDIESYIR PGCVILTVYL RLEKSTWEEL CRNLGSILKR  540
LLHAANDPFW TTGWVYTRVQ HFVAFTYNGH VVLDTPLLLK NNKNCRISCI KPIAVSLSQR  600
TEIAVKGFNL SCATTRLLCA LEGKYLVQET CYDLVDGADT TIENDQLQCL RFSCSIPNVT  660
GRGFIEVEDH GLSSSFFPFI VAEQEVCSEI CMLEGAIEGA ETADDILAEP EKLEAKNQAM  720
DFINELGWLL HRGHTKFRLG HMDPNLDLFP FRRFRLLLEF SMDHDWCAVV KKLLGILLEG  780
TVDAGEHPSI ELALLDMSLL HRAVRRKCRP MVELLLSFVL DKELGKTGSE DGQQVGGDGN  840
KFLFKPDAVG LMGLTPLHVA ASTDGCENIL DALTDDPGKV GIKAWGNARD STGLTPNDYA  900
CQRSCYTYIQ IVQRKISKKH ESRHVVLDIP GVILDSSSKK KQLDGHKSSK VSSLETERID  960
MKAMQAHCKL CEMKLAYGNT RSLVYRPAML SMVAIAAVCV CAALLFKSSP VTWERLKYGT  1020
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-175	SBP family protein