PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP015805.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 356aa MW: 41248.1 Da PI: 7.9301

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP015805.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.1	7.7e-30	6	100	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC++ C la yfpa++ +f n++++FG+sn+ k+++++++++r++a++++++e++++ ++P G++ v + + ++++ ++el+ PCP015805.1 6 ACAACKYQRRKCNQTCELAAYFPASRFVEFVNAQHMFGMSNIEKIIATVEPDQRPAAAETILFEGNIWRNNPSVGCLVVTRFVLERVDFYEKELE 100 7********************************************************************************99999999988875 PP
2	DUF260	42.1	2.6e-13	187	225	1	39
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGa 39 aCaaCk++rrkC++ C la yfpa++ +f n++++F + PCP015805.1 187 ACAACKYQRRKCNQTCELAAYFPANRFVEFVNAQHMFVT 225 7************************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MANSKACAAC KYQRRKCNQT CELAAYFPAS RFVEFVNAQH MFGMSNIEKI IATVEPDQRP 60 AAAETILFEG NIWRNNPSVG CLVVTRFVLE RVDFYEKELE FGVGFYLAYL AAEKVIVTTK 120 HNDDEQYIWE SKASGSFTVT RDVSREQLGR GTKITLFLKE DQLEYLEEIK DLVKKHFDKE 180 LMANSKACAA CKYQRRKCNQ TCELAAYFPA NRFVEFVNAQ HMFVTQPEED TNDTLRKWKI 240 KAGKAMFALK TTVEDDMLEH TRKTKTPKEA WDTFATLFSK RNDTRLQLLE NELLSVAQRD 300 MTITQYFHKF PRITADMKKY EERYIYMSSL KDAQEKAFDI GLMQPASFSG PGESRY

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MANSKACAAC KYQRRKCNQT CELAAYFPAS RFVEFVNAQH MFGMSNIEKI IATVEPDQRP  60
AAAETILFEG NIWRNNPSVG CLVVTRFVLE RVDFYEKELE FGVGFYLAYL AAEKVIVTTK  120
HNDDEQYIWE SKASGSFTVT RDVSREQLGR GTKITLFLKE DQLEYLEEIK DLVKKHFDKE  180
LMANSKACAA CKYQRRKCNQ TCELAAYFPA NRFVEFVNAQ HMFVTQPEED TNDTLRKWKI  240
KAGKAMFALK TTVEDDMLEH TRKTKTPKEA WDTFATLFSK RNDTRLQLLE NELLSVAQRD  300
MTITQYFHKF PRITADMKKY EERYIYMSSL KDAQEKAFDI GLMQPASFSG PGESRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-24	LBD family protein