PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP016004.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 258aa    MW: 28740.1 Da    PI: 8.0594
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP016004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-056991123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C+ C+k F++   L  H++ H
  PCP016004.1 69 YACNSCDKAFPTTQALGGHQNAH 91
                 89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MLNFMFKSPS MFNNSRSSAH RSTIAPCNRS PSISPCNPIT SDTSISMMYP MSPILGSCLY  60
FHNHGSCKYA CNSCDKAFPT TQALGGHQNA HRKERNDLRA NEVARAAQEN LRFRPYVFPH  120
DPWRWAPPSI YNDFINKTKP RMRSYDFYHF LGMAGDCNPK WGAGLGFGSG SKRKKRGYDH  180
NDDAEADSDK KKGKYVGVVD DLKVSMSNVT LSLATGSGDV EKSDSGLDWE DGEYMYVVGG  240
DGEASTSRTE ELDLNLKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172194KRKKRGYDHNDDAEADSDKKKGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-08C2H2 family protein