PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016138.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 201aa MW: 22657.9 Da PI: 10.1722

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016138.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.1e-06	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PCP016138.1 88 FVCEICNKGFQREQNLQLHRRGH 110 89*******************88 PP
2	zf-C2H2	14.1	0.00014	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +++ PCP016138.1 164 WKCEKCSKRYAVQSDWKAHSKVC 186 58*****************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MMNKGLMVDE NMSNLTCASG DLSASNSSIR NESSSAGTVY PHPPSSAQIQ QQQAPPPPKK 60 KRNLPGNPDP DAEVIALSPK SLMATNRFVC EICNKGFQRE QNLQLHRRGH NLPWKLKQRT 120 GKEVRKKVYL CPEPTCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK 180 AHSKVCGTRE YRCDCGTLFS R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	127	KLKQRTGKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	2e-97	C2H2 family protein