PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016173.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 276aa MW: 31726.1 Da PI: 9.2831

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016173.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	8.8e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l ++k +G g W++I+++ g++R++k+c++rw++yl PCP016173.1 14 KGAWTALEDQILTGYIKTHGEGKWRRIPKEAGLRRCGKSCRLRWLNYL 61 79********************************************97 PP
2	Myb_DNA-binding	56.7	5.4e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl PCP016173.1 67 RGNITQEEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTYL 112 7999****************.*****.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence
MGRSPCCSKE GLNKGAWTAL EDQILTGYIK THGEGKWRRI PKEAGLRRCG KSCRLRWLNY 60 LRPDIKRGNI TQEEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT YLRKKVNGAE 120 TPRLLGNKVD ENNKKKKKRD NSEKTNPSVN KTKPRAMVKS DSFAVIRTKA SRCNKVLVMP 180 DQLLDHQINH GLLEDTTTTI SEDSMLDFDV GELLVSENID IPDDSDFWKI CQQLEDNTNN 240 GGSKNRCPSS TSLAPLLFSE EMLKDWMRDD FFNRQC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-62	MYB family protein