PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016214.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CO-like

Protein Properties

Length: 340aa MW: 38125.7 Da PI: 6.3464

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016214.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.7	4.7e-08	4	36	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ +lfC+ ++ +lC +C +++H PCP016214.1 4 KLCDSCKSATGTLFCRADSAFLCVNCDSKIHAA 36 68*****************************54 PP
2	zf-B_box	27.9	5e-09	46	91	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ +++ C+ ++ lC +C +H+ H++vp+ PCP016214.1 46 VWLCEVCEQAPAHVTCKADDAALCVTCDRDIHSAnplsrrHERVPV 91 679*****************************66899999999986 PP
3	CCT	69.9	6.5e-24	279	322	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PCP016214.1 279 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 322 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MALKLCDSCK SATGTLFCRA DSAFLCVNCD SKIHAANKLA SRHARVWLCE VCEQAPAHVT 60 CKADDAALCV TCDRDIHSAN PLSRRHERVP VTPFYDSVNS ATDSVPAVKS AVNFLDDRYF 120 SDVDGEIEAR REEAEAASWL LPNPKAMENP DLNSGQYLFP EMDPYLDLDY GHVDPKLEDA 180 QEQNSCVTDG VVPEQSKNMQ PQLVNDHSFE IDFSAASKPF VYGYHHAQCL RQSVSSSSMD 240 VSIVPDANAM TDVSYPYNKS MTSAVESSHP AVQLSSADRE ARVLRYREKR KNRKFEKTIR 300 YASRKAYAET RPRIKGRFAK RTEVEIEAER TCRYGIVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-142	CO-like family protein