PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP016288.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 256aa    MW: 28447.4 Da    PI: 8.1544
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP016288.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20140174135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  PCP016288.1 140 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 174
                  ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MVGGPCSCGV LHHTQSNSSF SMLFSMPNHH KPYDHIHHET SYDHHHMYPF ASPSSSVDCT  60
LSLGTPSTRL TDNDVVSHDR RARNGERRSG NCVSNFCWDL LQPNKSSPSS HHKNGSRVGN  120
INGVTNAVSS NNDPLLARRC ANCDTTSTPL WRNGPRGPKS LCNACGIRFK KEERRATAAT  180
ANGGGSSVVG MESNGYHHHN SWIPHSQTQK MACFGNEFRF IEDDTVHHEN DMNGIPFLSW  240
RLNVTDRPSL VHDFTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.13e-60GATA family protein