PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016357.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 261aa MW: 29376.9 Da PI: 7.5003

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016357.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.6e-05	100	119	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ PCP016357.1 100 FSCPLCFKTFNRYNNMQMHM 119 89*****************9 PP
2	zf-C2H2	15.1	6.8e-05	184	206	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ PCP016357.1 184 FMCRKCGKAFAVRGDWRTHEKNC 206 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MQESAAADDH QSFLSSSRSD DIVDHQEEDD ETVTVALHLG LPSRTLSSAD LISRLSSPEI 60 SSDKEADVTV ASAGFASNRL NKGQYWIPTP AQILIGPTQF SCPLCFKTFN RYNNMQMHMW 120 GHGSQYRKGP ESLRGTQPTA MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG 180 IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCTCGSDFKH KRSLKDHIKA FGQGHAAYGI 240 DCFEEEDDVA SEIEENDSSS H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-126	C2H2 family protein