PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016390.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 649aa MW: 71327.2 Da PI: 7.5216

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016390.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37	8.2e-12	294	350	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g PCP016390.1 294 SQFRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 350 789****************77776664346655.77****************98 PP
2	AP2	50.6	4.9e-16	395	444	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g PCP016390.1 395 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 444 9*************988532...5***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MKSMNDHNNN NNGSSNSNNN NWFGFSLLPH MKMEDASSSS CSAALPSNNS SFYNLSSSGL 60 CCYGVGDNGN FQYSPLSVMP LKSDGSLCIM EALGRSQTEG IMPNTSPKLE DFLGGAAHDY 120 VSEEREAMAL SLDSYYNAAA EQQQQNHHIP VHSNSYYSGI PIQGIYHNQL EEEHSKNTQM 180 TQMPEDLKTC WVSRQYSAHP ALEHHHMNNV TMVVENGGSG SVHGGMNRGD LQSLTLSMSP 240 GSQTSCVTAP KQISPTQTEC AVAAIETKKR GCGKLGQKQP VHRKSIDTFG QRTSQFRGVT 300 RHRWTGRYEA HLWDNSCKKE GQTRKGRQGG YDMEEKAARA YDLAALKYWG SATHINFPLD 360 NYTAQLEEMK NMSRQEYVAH LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL 420 YLGTFGTQEE AAEAYDIAAI KFRGANAVTN FDITKYDVEK IMSSNTLLAG EFARRTKVIE 480 PNILAIEHNP PTQNNVEANQ TEINNGNSLD WKMALYQSAA QQQANNCAQT VDQKSIGSGS 540 YRNPSFSMAL EDYIGVESVH SSQTLMDESA RVGAHFSNPS SLVTSLGSSR EGSPDKSGSN 600 MLFAKPPLAS KFISPTAAAA VGSWFPSAQL RPPAVSMSQL PLFAAWNET

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MKSMNDHNNN NNGSSNSNNN NWFGFSLLPH MKMEDASSSS CSAALPSNNS SFYNLSSSGL  60
CCYGVGDNGN FQYSPLSVMP LKSDGSLCIM EALGRSQTEG IMPNTSPKLE DFLGGAAHDY  120
VSEEREAMAL SLDSYYNAAA EQQQQNHHIP VHSNSYYSGI PIQGIYHNQL EEEHSKNTQM  180
TQMPEDLKTC WVSRQYSAHP ALEHHHMNNV TMVVENGGSG SVHGGMNRGD LQSLTLSMSP  240
GSQTSCVTAP KQISPTQTEC AVAAIETKKR GCGKLGQKQP VHRKSIDTFG QRTSQFRGVT  300
RHRWTGRYEA HLWDNSCKKE GQTRKGRQGG YDMEEKAARA YDLAALKYWG SATHINFPLD  360
NYTAQLEEMK NMSRQEYVAH LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL  420
YLGTFGTQEE AAEAYDIAAI KFRGANAVTN FDITKYDVEK IMSSNTLLAG EFARRTKVIE  480
PNILAIEHNP PTQNNVEANQ TEINNGNSLD WKMALYQSAA QQQANNCAQT VDQKSIGSGS  540
YRNPSFSMAL EDYIGVESVH SSQTLMDESA RVGAHFSNPS SLVTSLGSSR EGSPDKSGSN  600
MLFAKPPLAS KFISPTAAAA VGSWFPSAQL RPPAVSMSQL PLFAAWNET

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-149	AP2 family protein