PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016603.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 375aa MW: 40170.5 Da PI: 7.3886

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016603.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4.1e-18	51	98	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl PCP016603.1 51 RGPWTPEEDELLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 98 89****************************99**********97 PP
2	Myb_DNA-binding	46.7	7.5e-15	109	149	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l PCP016603.1 109 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 149 89*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MRNPSPSSKA AAAAASAKMQ TTITASSSSS KAAGVAGGTK TPCCAKVGLK RGPWTPEEDE 60 LLANYIKKEG EGRWRTLPKR AGLLRCGKSC RLRWMNYLRP SVKRGQIAPD EEDLILRLHR 120 LLGNRWSLIA GRIPGRTDNE IKNYWNTHLS KKLINQGIDP RTHKPLNPDH HSAADDADVD 180 NTNKSTAVAS SSKANDRFSN PNPSPPSDRL VHKEGDPNNS RNGGNIAIDD HDLGTIVHGY 240 ANMITSINNP DASSSATATG TLSLRSNNSH GGVLLGGGGN EEDDDINCCA DDVFSSFLNS 300 LINEDPFHGQ HQLQQVLQNG NVSAHAAAAG SENLPLITMT GASTTAPSTF GWESAVLMSS 360 AFIQNDHQRV NDPTE

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MRNPSPSSKA AAAAASAKMQ TTITASSSSS KAAGVAGGTK TPCCAKVGLK RGPWTPEEDE  60
LLANYIKKEG EGRWRTLPKR AGLLRCGKSC RLRWMNYLRP SVKRGQIAPD EEDLILRLHR  120
LLGNRWSLIA GRIPGRTDNE IKNYWNTHLS KKLINQGIDP RTHKPLNPDH HSAADDADVD  180
NTNKSTAVAS SSKANDRFSN PNPSPPSDRL VHKEGDPNNS RNGGNIAIDD HDLGTIVHGY  240
ANMITSINNP DASSSATATG TLSLRSNNSH GGVLLGGGGN EEDDDINCCA DDVFSSFLNS  300
LINEDPFHGQ HQLQQVLQNG NVSAHAAAAG SENLPLITMT GASTTAPSTF GWESAVLMSS  360
AFIQNDHQRV NDPTE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	4e-80	MYB family protein