PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016692.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 732aa MW: 83301.4 Da PI: 7.1479

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016692.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.9	5.7e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+ +++++G ++W++ +++ g++R++k+c++rw++yl PCP016692.1 15 RGPWTPEEDKRLLAYIQLHGHRSWSSLPQKAGLKRCGKSCRLRWRNYL 62 89*********************************************7 PP
2	Myb_DNA-binding	49.6	9e-16	68	112	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ Ed+ +++++++lG++ W++Ia++++ +Rt++++k++w+ + PCP016692.1 68 RGNFSLHEDQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNAH 112 89******************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence
MGKSSGYAPE SGIKRGPWTP EEDKRLLAYI QLHGHRSWSS LPQKAGLKRC GKSCRLRWRN 60 YLRPDIKRGN FSLHEDQTII QLHALLGNRW SAIAAHLPKR TDNEIKNYWN AHLKKRLAKM 120 GFDPVTHKSK AAILASANGD PKMLSNLSHI AQWESARLQA EARFVKESFL RMPESAPAVS 180 LFDDYHQLAP PIVPQCLDML EASAWESLIS MSKSSSRSAA LTNDINGLDH HHVHDHGLNM 240 NGQDCGPNFQ RSQMSTYVTL DDSFAFDESH AMRAIWQDIR RQSRRHSLLC NADEKLSGAV 300 EHHGKTCVFG RHERIVDVLG IRSYSSIEEV KRGVRQYFFS LVCRFNEWNC AIWSSDGQAL 360 DTSDFIKDIV EKVTVRYKGE SFSKIDLPLL ESVASETEDH DGTVMTSKDF QTMFEGNKPR 420 LIQWPIHALN RVETFFYQLI AAYLDGVANT GMLELGELQL ATHFAERKPT GQPFFRNGMK 480 ESSQLIRSQI GLQQPYLVCL VFFTTQRRHW FEVESAPAIL ILKGSFNYSR FLNIMEQNKQ 540 QELPQLRSTT SMQLGCDARG YSRAGYDTVT WVEEKLSNEV ETRSADEEQS IAPAAEILQT 600 CGERTDMIDV PQLFIVRYKR NVTEEGEKPG KKPKTIWDAL QDQELDPASQ LVAKYHGSDD 660 TRERTRTPHL VPEDSEPMWT KVDEGETGLE TCLMKTYPLP SPIWNQEILM KCYCQVPIPS 720 SGDAASFPKV LK

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence

MGKSSGYAPE SGIKRGPWTP EEDKRLLAYI QLHGHRSWSS LPQKAGLKRC GKSCRLRWRN  60
YLRPDIKRGN FSLHEDQTII QLHALLGNRW SAIAAHLPKR TDNEIKNYWN AHLKKRLAKM  120
GFDPVTHKSK AAILASANGD PKMLSNLSHI AQWESARLQA EARFVKESFL RMPESAPAVS  180
LFDDYHQLAP PIVPQCLDML EASAWESLIS MSKSSSRSAA LTNDINGLDH HHVHDHGLNM  240
NGQDCGPNFQ RSQMSTYVTL DDSFAFDESH AMRAIWQDIR RQSRRHSLLC NADEKLSGAV  300
EHHGKTCVFG RHERIVDVLG IRSYSSIEEV KRGVRQYFFS LVCRFNEWNC AIWSSDGQAL  360
DTSDFIKDIV EKVTVRYKGE SFSKIDLPLL ESVASETEDH DGTVMTSKDF QTMFEGNKPR  420
LIQWPIHALN RVETFFYQLI AAYLDGVANT GMLELGELQL ATHFAERKPT GQPFFRNGMK  480
ESSQLIRSQI GLQQPYLVCL VFFTTQRRHW FEVESAPAIL ILKGSFNYSR FLNIMEQNKQ  540
QELPQLRSTT SMQLGCDARG YSRAGYDTVT WVEEKLSNEV ETRSADEEQS IAPAAEILQT  600
CGERTDMIDV PQLFIVRYKR NVTEEGEKPG KKPKTIWDAL QDQELDPASQ LVAKYHGSDD  660
TRERTRTPHL VPEDSEPMWT KVDEGETGLE TCLMKTYPLP SPIWNQEILM KCYCQVPIPS  720
SGDAASFPKV LK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01140.1	2e-82	MYB family protein