PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016763.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 249aa MW: 28689.7 Da PI: 8.4634

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016763.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	77	99	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk F + L++H H PCP016763.1 77 CSydSCGKIFIDAGALRKHADIH 99 77779**************8877 PP
2	zf-C2H2	11.7	0.00082	190	209	5	23
TTTEEESSHHHHHHHHHH.T CS zf-C2H2 5 dCgksFsrksnLkrHirt.H 23 C+k++ + + LkrH r H PCP016763.1 190 GCNKTYIHEDKLKRHYRAvH 209 7***************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MESQFHHNSS ERRPTFRSKT LPVKWFKECR SKVRYFYGTQ LQVLIVADTS EALDEKSKKT 60 MAPEPEPEPT TKVLFLCSYD SCGKIFIDAG ALRKHADIHA EIQHVCLYEG CGKVLFPDRK 120 FLDSSKMERH FLIHSEEKDY VCPREGCGKI DEPVSVPKYA TLPAEKQIRT PKPPYSKASS 180 DLSYACIYDG CNKTYIHEDK LKRHYRAVHP GHVFDVARNE IDEASDQDAY AGKRVNVKSQ 240 QNMLRPNWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	9e-55	C2H2 family protein