PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP016888.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 243aa    MW: 28091.3 Da    PI: 10.3064
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP016888.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1002.3e-31671652102
                   HHHHHHHHHCTG.......GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeilede.......elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                   Fl+k++++le++         ++++sw+ +g+ f+v+ + +f++ +LpkyFkh+nf+SF+RQLn+YgFkk++ +          weFkh++F+kg +
   PCP016888.1  67 FLSKTFDLLEEQdvggdggGKRNIVSWNVEGTGFIVWSPADFSELLLPKYFKHNNFSSFIRQLNTYGFKKTSPKL---------WEFKHEKFQKGCR 154
                   9*********88788888899*************************************************99876.........************* PP

                   XXXXXXXXXXX CS
  HSF_DNA-bind  92 ellekikrkks 102
                   ++l +i rkk 
   PCP016888.1 155 HMLVEITRKKC 165
                   ********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MNLRNLKKKK VKRNQSTFHA ISQYFPKARG WKHGINKRLV QCRIFQKLAS QPYMAETSSR  60
TRSAAPFLSK TFDLLEEQDV GGDGGGKRNI VSWNVEGTGF IVWSPADFSE LLLPKYFKHN  120
NFSSFIRQLN TYGFKKTSPK LWEFKHEKFQ KGCRHMLVEI TRKKCEPSAF PAYLKASEES  180
GSTSTALAAA EENNCLLLME ENKNLRKQQL ELQVQIAQFR TLENKLLDCV AQYMDDHRNK  240
ARC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-36HSF family protein