PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP016893.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 375aa MW: 42145.5 Da PI: 7.2039

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP016893.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	24.8	5.3e-08	54	116	2	55
AP2 2 gykGV.......rwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV ++++++gr++A+++d ++n ++k+ + g ++ +e A +a++ a++k++g PCP016893.1 54 VYRGVtsvdvfeFRHRWTGRFEAHLWDkNCWNEsQNKKGRQGAYDDEEAAGRAYDLAALKYWG 116 67777777777789***********99998898888888*99***********98 PP
2	AP2	52.7	1e-16	159	210	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I ++ +k+ +lg++ t eeAa a++ a+ +++g PCP016893.1 159 SKYRGVARHHQNGRWEARIGRVYG---NKYLYLGTYATQEEAAIAYDMAAIEYRG 210 89***************99654...4***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MAKTSQKTKN STAGSTNNSS TTTTTTSSTA TTTTKGKRTR KSVRRDSPPQ RSSVYRGVTS 60 VDVFEFRHRW TGRFEAHLWD KNCWNESQNK KGRQGAYDDE EAAGRAYDLA ALKYWGRDTV 120 LNFPVSTYQE EIIEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHQN GRWEARIGRV 180 YGNKYLYLGT YATQEEAAIA YDMAAIEYRG LNAVTNFDLS RYIKSLCPDN TNGPNDAQQN 240 PNGDLHQMQN PNGVLNQMHN PDCKPELEIM PDHTSSSSAS QSAVVLPRSE NGLSASSAPG 300 LLLQSPKFKE MLERSSVTEC SPTLSEPEIR RRIFPDDIQT YFDCQDLNSF AEVDDIIFGD 360 LRSFTSPVFH CELDA

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MAKTSQKTKN STAGSTNNSS TTTTTTSSTA TTTTKGKRTR KSVRRDSPPQ RSSVYRGVTS  60
VDVFEFRHRW TGRFEAHLWD KNCWNESQNK KGRQGAYDDE EAAGRAYDLA ALKYWGRDTV  120
LNFPVSTYQE EIIEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHQN GRWEARIGRV  180
YGNKYLYLGT YATQEEAAIA YDMAAIEYRG LNAVTNFDLS RYIKSLCPDN TNGPNDAQQN  240
PNGDLHQMQN PNGVLNQMHN PDCKPELEIM PDHTSSSSAS QSAVVLPRSE NGLSASSAPG  300
LLLQSPKFKE MLERSSVTEC SPTLSEPEIR RRIFPDDIQT YFDCQDLNSF AEVDDIIFGD  360
LRSFTSPVFH CELDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-106	AP2 family protein