PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP017127.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 371aa MW: 40549.5 Da PI: 9.3075

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP017127.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.9	5.6e-19	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++vk +G+++W++I++ ++ gR++k+c++rw + PCP017127.1 12 KGPWSPEEDEALQNLVKIYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	54.3	3.2e-17	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ PCP017127.1 66 PFSPEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MASTKKVVDR IKGPWSPEED EALQNLVKIY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP 60 EVEHRPFSPE EDDTIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSMSEDL 120 SSDVHAHPPH KRSAXXXXXX XXXTIARLLN GRTDNAIKNH WNSTLKRKCS SMSEDLSSDV 180 HAHPPHKRSA SVGAVSGTGL YFNPGSPSGS DLSDSSLHGG VSPSSQVFTP LARPVPPPIA 240 PPPMEAAASA VAVDPPTSLS LSLPGSESCD GSNRTASGFG SNPIVSPTQM VEQPHEVAAP 300 LPVVGLQPPP RQSNLNNDQR FFSSEFLDVM QEMIRKEVRN YMTGIEQTGQ CMHTEAIRNA 360 VIKRIGISKI E

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MASTKKVVDR IKGPWSPEED EALQNLVKIY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
EVEHRPFSPE EDDTIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSMSEDL  120
SSDVHAHPPH KRSAXXXXXX XXXTIARLLN GRTDNAIKNH WNSTLKRKCS SMSEDLSSDV  180
HAHPPHKRSA SVGAVSGTGL YFNPGSPSGS DLSDSSLHGG VSPSSQVFTP LARPVPPPIA  240
PPPMEAAASA VAVDPPTSLS LSLPGSESCD GSNRTASGFG SNPIVSPTQM VEQPHEVAAP  300
LPVVGLQPPP RQSNLNNDQR FFSSEFLDVM QEMIRKEVRN YMTGIEQTGQ CMHTEAIRNA  360
VIKRIGISKI E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23290.1	2e-68	MYB family protein