PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP017259.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 185aa    MW: 20661.2 Da    PI: 5.0411
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP017259.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.34.7e-14952144
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 k+i nk   + tfskRr+g++ KA  L+ L++a  avi fs+ +
  PCP017259.1  9 KKITNKNYLKATFSKRRKGLFRKATDLCCLTGATLAVIAFSPGN 52
                 679999999********************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MGKNRIDIKK ITNKNYLKAT FSKRRKGLFR KATDLCCLTG ATLAVIAFSP GNNPFLFGHP  60
SAESVIDRFL GERARCASDD GGEEVLGSAS AGNEHQDLES SREEVKEGSD VMDEEKGSLW  120
WEKPIEEGLE LPELKKYKSL LERLRENAAI KLDEMNRREL CTKDYLGLNF DIGSSSSTPA  180
DERDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-31M-type_MADS family protein