PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP017269.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 660aa MW: 74370.3 Da PI: 9.6335

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP017269.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.9	9.8e-15	76	129	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs ++ Lr+llP + ++ +kKls ++ ++v+YI +Lq PCP017269.1 76 KKLNHNASERDRRKKINSLYSSLRSLLPAD-QTLQKKLSIPNTVSRVVKYIPELQ 129 6789***********************6.589999*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence
MLALSPPMFS TIGWPIDQDP TSHDYYKDHI TTTNDQTAES SSLHILPSGH PKSELDRSTP 60 STTISGEYSS VSPVAKKLNH NASERDRRKK INSLYSSLRS LLPADQTLQK KLSIPNTVSR 120 VVKYIPELQK QVEGLIRKRE ELLSRITKQE SALHEEKNQI KSAARSSLSA VSAYQLNDKE 180 VAIQISSLKT KNYLLSDILL NLEEEEGLQI LNASSFESSG GRVFYNLQFQ LGADHFPGPL 240 HHCSTILSAL GPHHALMVLF LGTHTRTSQW VTHPGNALVR YSLNFGVLME PEASELPKVL 300 VQVFFLLFEA LEKQDMAIAS VQAQMANLTS LLSQFIKRSR MQRVGTFGVS YRQGYQTNQH 360 PQLIENGGWD NVNAWGYLGH NQSRNNLFSN TYNPCRSDHS NFMWREPQQV QQEGYWQPSE 420 EFYWRPMQPL QPPPQQSQPN LGSSLDYDKI LPILTSLTKG LKNQAKEMGE VKKQIGQMAE 480 FMGQFREQGK LPSSTIVNPN GGFETANTIT LRSGKEIGTS SKTSKPTQEE DKKLLQQEEI 540 TTAREEHPLP QPPKHPMSSN STKVGPNSIP SDVIPPNVPF PGLNGKVGKK VHFGAFWSSF 600 GHGMDSLHME QGGWTKLKSK EARNMLQIWR NKFKTKKIRK EQETWNIIQT TLSYPNLILT

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence

MLALSPPMFS TIGWPIDQDP TSHDYYKDHI TTTNDQTAES SSLHILPSGH PKSELDRSTP  60
STTISGEYSS VSPVAKKLNH NASERDRRKK INSLYSSLRS LLPADQTLQK KLSIPNTVSR  120
VVKYIPELQK QVEGLIRKRE ELLSRITKQE SALHEEKNQI KSAARSSLSA VSAYQLNDKE  180
VAIQISSLKT KNYLLSDILL NLEEEEGLQI LNASSFESSG GRVFYNLQFQ LGADHFPGPL  240
HHCSTILSAL GPHHALMVLF LGTHTRTSQW VTHPGNALVR YSLNFGVLME PEASELPKVL  300
VQVFFLLFEA LEKQDMAIAS VQAQMANLTS LLSQFIKRSR MQRVGTFGVS YRQGYQTNQH  360
PQLIENGGWD NVNAWGYLGH NQSRNNLFSN TYNPCRSDHS NFMWREPQQV QQEGYWQPSE  420
EFYWRPMQPL QPPPQQSQPN LGSSLDYDKI LPILTSLTKG LKNQAKEMGE VKKQIGQMAE  480
FMGQFREQGK LPSSTIVNPN GGFETANTIT LRSGKEIGTS SKTSKPTQEE DKKLLQQEEI  540
TTAREEHPLP QPPKHPMSSN STKVGPNSIP SDVIPPNVPF PGLNGKVGKK VHFGAFWSSF  600
GHGMDSLHME QGGWTKLKSK EARNMLQIWR NKFKTKKIRK EQETWNIIQT TLSYPNLILT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	9e-42	bHLH family protein