PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP017886.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 242aa    MW: 27124.7 Da    PI: 7.2877
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP017886.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1891145256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tk+q + Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  PCP017886.1  91 RKKLRLTKQQSTLLEESFNRHSTLNLAQKQSLAEQLNLKPRQVEVWFQNRRARTK 145
                  678899***********************************************98 PP
2HD-ZIP_I/II115.82.5e-3791178188
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                  +kk+rl+k+q++lLEesF+++++L+  +K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+ en+ L++e +eL+
  PCP017886.1  91 RKKLRLTKQQSTLLEESFNRHSTLNLAQKQSLAEQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLSIENRGLKQELQELK 178
                  69*************************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MDGDEAACNT ELQLGLGVCE YASRQENKDN PSVCLDLSFA LCPKKEVPSS DDHIANGSSL  60
KTMDEDEDSY ERSTEHTNIK GVIMNNKNVV RKKLRLTKQQ STLLEESFNR HSTLNLAQKQ  120
SLAEQLNLKP RQVEVWFQNR RARTKLKQTE VDCEFLKKCC ESLSIENRGL KQELQELKSL  180
NGDGTSPLYI QIPKATMLTI CPSCEKMVTA YHNNQAAAKK AEDLNVVRKS SNKLQGGSDG  240
TI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.18e-54HD-ZIP family protein