PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP017992.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 365aa MW: 41100 Da PI: 9.6364

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP017992.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.9	1e-14	108	159	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + ++++ + a+i+ A+e++k+L+ PCP017992.1 108 QRMTHIAVERNRRKQMNDHLAILRSLMPDS---YAQRGDQASIVGGAIEFVKELE 159 79**************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MPLLEDPPFN FIVYDTISAT PYTSQAQHYS SETANNFIPP KKFYYCNNAA AKSSNTSMIL 60 EAAGGGGGKK TKQMSSHQQP QGQGEGQGRK KRRRKARVCK NKEEAETQRM THIAVERNRR 120 KQMNDHLAIL RSLMPDSYAQ RGDQASIVGG AIEFVKELEH LLQSLEAQKL QLFQHQQHNP 180 EDIVTTPSKI VPSSPFTQLL EYPQKHSWSH SHCPNNKYTS KTKGATADIE VTLIETHANL 240 KILSHRNIAA RSQLPKLVAG IHSLHLTILH LTVSTMDPFV LYCISLKIEE GCLLSSADDI 300 AASLHHMLRV IEEAAASCKL VATELILGFP FRLFSARFPH VTRKKNLNYK SNLHETGIMP 360 WWHTY

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MPLLEDPPFN FIVYDTISAT PYTSQAQHYS SETANNFIPP KKFYYCNNAA AKSSNTSMIL  60
EAAGGGGGKK TKQMSSHQQP QGQGEGQGRK KRRRKARVCK NKEEAETQRM THIAVERNRR  120
KQMNDHLAIL RSLMPDSYAQ RGDQASIVGG AIEFVKELEH LLQSLEAQKL QLFQHQQHNP  180
EDIVTTPSKI VPSSPFTQLL EYPQKHSWSH SHCPNNKYTS KTKGATADIE VTLIETHANL  240
KILSHRNIAA RSQLPKLVAG IHSLHLTILH LTVSTMDPFV LYCISLKIEE GCLLSSADDI  300
AASLHHMLRV IEEAAASCKL VATELILGFP FRLFSARFPH VTRKKNLNYK SNLHETGIMP  360
WWHTY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	95	RKKRRRK
2	90	95	KKRRRK
3	109	120	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46690.1	6e-58	bHLH family protein