PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018051.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CAMTA

Protein Properties

Length: 1309aa MW: 146235 Da PI: 6.5672

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018051.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	177.4	1.8e-55	12	127	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e ++rwlk+ e++ iL+n+ek++++ ++++rp+sgsl+L+n++++r+fr+DG++w+kkkdg+tv E+he+LKvg+ve+l+cyYah+e+np+fqrr+y PCP018051.1 12 QEaQTRWLKPAEVLFILQNHEKYKIAPQPPQRPSSGSLFLFNKRILRFFRRDGHNWRKKKDGRTVGEAHERLKVGNVETLNCYYAHGEDNPSFQRRSY 109 5669******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylev 117 w+L+ ++e+ivlvhy+e+ PCP018051.1 110 WMLDPAYEHIVLVHYRET 127 **************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1309 aa Download sequence
MQSGYNINDL FQEAQTRWLK PAEVLFILQN HEKYKIAPQP PQRPSSGSLF LFNKRILRFF 60 RRDGHNWRKK KDGRTVGEAH ERLKVGNVET LNCYYAHGED NPSFQRRSYW MLDPAYEHIV 120 LVHYRETNEG NPSTGSFVQS PVSSSFSHSP SSNTTPTVSD LHEPNQNLSS PGSLEVSSDI 180 VNKNRRGNLE NLYGMGELDS STKFDVNQAL RQLEEQLSLN EDSFEGFMDD NPNASDILDY 240 TDITNKDQFA AFNEPRYVVH DQFYSEPAQM QGNADYSGEN CKIIDHEFRD GNKESATWKE 300 FLDPRKNSSV LKSEEKSLYT LDSNENSLSS LRSGPTAVQE HHQWLNSNEN IVDNDSLPLP 360 LEVDRSKLYP YDFVSGTHPD YYTQLFEQGQ IGSLDSDISL TVAQNQKFTI REISPEWGYA 420 TEATKVVIIG SFLCDPSESA WTCMFGDVEV PAQIIQEGVI RCEAPPHLPR KVTVCITAGN 480 RVSCSEVREF DYRVKSSSCT HNNSPPQEAA KSAEELLLLV RFVQLLMDDS SIQKRESVGS 540 ESLRKLKADD DSWSSIIEAL LLGSGSSSST IYWLLEELLK DKLQQWLSSR SHEFDQNGCS 600 LSKKEQVIIH MVAGLGFAWA LNPILNCGVN INFRDINGWT ALHWTARFGR EKMAAVLLAS 660 GASAGAVTDP RSQDPVGKTA ASIAATHGHK GLAGYLSELS LTSHLSSLKL EESEFSKGSA 720 EFEAELTVNS ISNRSLEGSE DQVSLKNTLA AVRNAAQAAA RIQSAFRAHS FRKRQHKEAG 780 VSIDDYGISS DDIQGLSALS KLTFRNPRDY NSAAISIQKK YRGYKGRKDF LTLRQKVVKI 840 QAYVRGYQVR KHYKVICWAV GILDKVVLRW RRKGVGLRGF RQETKSRDSE DEDILKVFRK 900 QKVNVAVDEA VSCVLSMVES PEARQQYHRM LTRHHQAKAE LGGTSREGAE ADAPTSGGDN 960 LNTPGRFVDQ VLTRSADSTT LVETKARSHN EMKKTLNWWD LIWFGLRVVI GAGILVLTGL 1020 EVKNHAGAVI VLLYVVSGEV GVGWWDGGFR LGKGGGRGDG FSGKKMANLR SKKRVVGLVA 1080 SGERWTQRLT LCRVASVRRL SALRVESRIN EKDDDMELIN EAIMRLLEER KNSKSSTGEG 1140 VSQGGGDDDD DDKDEDRLLL HRLLSQLESL KGNGEIRNSE TLTKMGEETS SKDGELKPEN 1200 ESCGKADGGG AEIDTEKIVR EVNKVKKQNS ITHWLLSIMI VLTVAWQASE ATFLWKLNEG 1260 FRHPFRCIGG MLTGNGKDSE ERHRGESPSL PSLQIPEFPL PDISLSEKH

Sequence ? help Back to Top

Protein Sequence Length: 1309 aa Download sequence

MQSGYNINDL FQEAQTRWLK PAEVLFILQN HEKYKIAPQP PQRPSSGSLF LFNKRILRFF  60
RRDGHNWRKK KDGRTVGEAH ERLKVGNVET LNCYYAHGED NPSFQRRSYW MLDPAYEHIV  120
LVHYRETNEG NPSTGSFVQS PVSSSFSHSP SSNTTPTVSD LHEPNQNLSS PGSLEVSSDI  180
VNKNRRGNLE NLYGMGELDS STKFDVNQAL RQLEEQLSLN EDSFEGFMDD NPNASDILDY  240
TDITNKDQFA AFNEPRYVVH DQFYSEPAQM QGNADYSGEN CKIIDHEFRD GNKESATWKE  300
FLDPRKNSSV LKSEEKSLYT LDSNENSLSS LRSGPTAVQE HHQWLNSNEN IVDNDSLPLP  360
LEVDRSKLYP YDFVSGTHPD YYTQLFEQGQ IGSLDSDISL TVAQNQKFTI REISPEWGYA  420
TEATKVVIIG SFLCDPSESA WTCMFGDVEV PAQIIQEGVI RCEAPPHLPR KVTVCITAGN  480
RVSCSEVREF DYRVKSSSCT HNNSPPQEAA KSAEELLLLV RFVQLLMDDS SIQKRESVGS  540
ESLRKLKADD DSWSSIIEAL LLGSGSSSST IYWLLEELLK DKLQQWLSSR SHEFDQNGCS  600
LSKKEQVIIH MVAGLGFAWA LNPILNCGVN INFRDINGWT ALHWTARFGR EKMAAVLLAS  660
GASAGAVTDP RSQDPVGKTA ASIAATHGHK GLAGYLSELS LTSHLSSLKL EESEFSKGSA  720
EFEAELTVNS ISNRSLEGSE DQVSLKNTLA AVRNAAQAAA RIQSAFRAHS FRKRQHKEAG  780
VSIDDYGISS DDIQGLSALS KLTFRNPRDY NSAAISIQKK YRGYKGRKDF LTLRQKVVKI  840
QAYVRGYQVR KHYKVICWAV GILDKVVLRW RRKGVGLRGF RQETKSRDSE DEDILKVFRK  900
QKVNVAVDEA VSCVLSMVES PEARQQYHRM LTRHHQAKAE LGGTSREGAE ADAPTSGGDN  960
LNTPGRFVDQ VLTRSADSTT LVETKARSHN EMKKTLNWWD LIWFGLRVVI GAGILVLTGL  1020
EVKNHAGAVI VLLYVVSGEV GVGWWDGGFR LGKGGGRGDG FSGKKMANLR SKKRVVGLVA  1080
SGERWTQRLT LCRVASVRRL SALRVESRIN EKDDDMELIN EAIMRLLEER KNSKSSTGEG  1140
VSQGGGDDDD DDKDEDRLLL HRLLSQLESL KGNGEIRNSE TLTKMGEETS SKDGELKPEN  1200
ESCGKADGGG AEIDTEKIVR EVNKVKKQNS ITHWLLSIMI VLTVAWQASE ATFLWKLNEG  1260
FRHPFRCIGG MLTGNGKDSE ERHRGESPSL PSLQIPEFPL PDISLSEKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein