PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018055.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 475aa MW: 52225.6 Da PI: 7.1658

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018055.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.1	1.7e-40	186	262	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+ak+yhr+h++C hsk+p+v+v+g+e rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+ PCP018055.1 186 CQVEGCNLDLSSAKDYHRKHRICANHSKSPKVVVDGVELRFCQQCSRFHGLSEFDENKRSCRRRLSDHNARRRKPQT 262 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MNSVLMMEWN EKPPSLWDLE NLFMYGTKVT ENPKKLQPAD WGIEGERGMN SESFYSTGGD 60 GGSGVSGSDL GDGSSKSSKS ASVNSSVEES KKSNFNLEAF EGFPKDFFDK KDSAEAEALG 120 SSPTHDVSAG SGEPLLSLKL GKRMYFEDVC AGNNHETSSL SVISTSMATK TKRFKSAAQS 180 AFASHCQVEG CNLDLSSAKD YHRKHRICAN HSKSPKVVVD GVELRFCQQC SRFHGLSEFD 240 ENKRSCRRRL SDHNARRRKP QTEVVRHPAR LSSSLFSTDG MSLSLDQGPY VYTKHASNLT 300 WDGSCNLKFA QTKEYFPNPA KAGGTARQLN FHNNGSPGSI NVLYQDSSRL SPSKGTVAEV 360 LNRGAEESMI SFNLDATQDI HRALSLLSTS PWVSGEGKSV PLDTNQSYHN NSPQQGMHAM 420 TQGVPASSEY WQTQHPSLDT QAHVSHSHSN VGNQFQDLHQ FKAPYEFGYN PNQFS

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MNSVLMMEWN EKPPSLWDLE NLFMYGTKVT ENPKKLQPAD WGIEGERGMN SESFYSTGGD  60
GGSGVSGSDL GDGSSKSSKS ASVNSSVEES KKSNFNLEAF EGFPKDFFDK KDSAEAEALG  120
SSPTHDVSAG SGEPLLSLKL GKRMYFEDVC AGNNHETSSL SVISTSMATK TKRFKSAAQS  180
AFASHCQVEG CNLDLSSAKD YHRKHRICAN HSKSPKVVVD GVELRFCQQC SRFHGLSEFD  240
ENKRSCRRRL SDHNARRRKP QTEVVRHPAR LSSSLFSTDG MSLSLDQGPY VYTKHASNLT  300
WDGSCNLKFA QTKEYFPNPA KAGGTARQLN FHNNGSPGSI NVLYQDSSRL SPSKGTVAEV  360
LNRGAEESMI SFNLDATQDI HRALSLLSTS PWVSGEGKSV PLDTNQSYHN NSPQQGMHAM  420
TQGVPASSEY WQTQHPSLDT QAHVSHSHSN VGNQFQDLHQ FKAPYEFGYN PNQFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	2e-74	SBP family protein