PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP018351.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 168aa    MW: 18793.6 Da    PI: 10.3766
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP018351.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.18.3e-22346245
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                  +e++s rqvtfskRr g++KKA+EL +LC+ae+av++fs+ gk
  PCP018351.1  3 VVEDSSSRQVTFSKRRSGVFKKANELAILCGAEIAVLVFSPGGK 46
                 689**************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MKVVEDSSSR QVTFSKRRSG VFKKANELAI LCGAEIAVLV FSPGGKPFSF GHPNVESIAD  60
RFLNEECPKS KFRVSKNDEK AGRLNQQLED MDSQLEAEKK RGLMLDKAVL KARGLPLKSK  120
PPSFREQSRA DLRKMKASLE ALRETVKERA TEVEASSSLL LLANDRRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-33M-type_MADS family protein