PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP018352.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 276aa    MW: 31389.5 Da    PI: 7.4638
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP018352.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.53e-171765149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 krien+    v+fskRr g++KKA+E+ +LC+ ev +++fs++gk + y
  PCP018352.1 17 KRIENEEDLLVSFSKRRSGVFKKASEMITLCGGEVGIVVFSPSGKPFSY 65
                 79******************************************96655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MAMEGKQTRG RQKIEMKRIE NEEDLLVSFS KRRSGVFKKA SEMITLCGGE VGIVVFSPSG  60
KPFSYGHPSV DNVINRFLDQ NPPENDDYTI QLMENHRQMR ISEAIEQYNE LINQLEDVQE  120
RQKSLLRKAR RRRNREHLWW SAPLDELGVD ELKQVYVSSA EIHMTISNHL KERSTNIFGA  180
SSSGSVQQTN PNFDANPSGT VRRRRIRAVT VQLAEALGVL EGCCMARQRG FSRIVIESDS  240
KGIVEWLNGC IEQGAWELFP VLGKIRSEGE SFVSCD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-36M-type_MADS family protein