PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018454.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 1075aa MW: 118946 Da PI: 7.8914

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018454.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.3e-40	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCevhsk++ +lv++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ PCP018454.1 149 MCQVDNCKEDLSNAKDYHRRHKVCEVHSKSTRALVAKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 226 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1075 aa Download sequence
MMENAGGQVA APIYIHQTLS GRFCDSPVMG RKRDLPYQGP NYQHPYSQQP RFTNPGNDWN 60 PHVWDWDTVR FVAKPLDSRM MHLGTTSTTE QRNKEEASGP VKDTAEDEDD ESLQLNLAGG 120 FTSVEEPVPR PNKRVRSGSP GNGNGNYPMC QVDNCKEDLS NAKDYHRRHK VCEVHSKSTR 180 ALVAKQMQRF CQQCSRFHPL SEFDEGKRSC RRRLAGHNRR RRKTQPEDVT SRLTLPGDGD 240 NKIIGNSDIV NLLAAIARPQ GKNDVRNING SSVLDREQLL RVLSKINSLP LSADLAAKLP 300 NLGSLTRKAS ELLSLDLQNK LNGRASVSTM DLLTVLSATL ATSAPEAHAM LSQKCSQSSD 360 SEKTKLTCSD QAAEPNLNKI PPQEIHSAGG ERSSTSYQSP MEDSDCQVQE AGVNLPLQLF 420 SSSPENDSLP KLASSRKYFS SDSSNPTEDR SPSSSPPVVQ TLFPLKSLAE IVKSDKLPVS 480 KEGSGNPDTS WTCGSNMPFD LFRGSNRGAE ASSIQNFPNQ PGYTSSGSDH SPSSLNSDVQ 540 DRTGRILFKL FDKDPSHLPG TLRTQIFNWL SSSPSEMESY IRPGCVVLSV YVSMPSASWE 600 QLEENLVQRV SSLVQSSDSD FWRSGRFLVN TGRQLASHKD GKIRTCKAWR SCSSPELISV 660 SPLAVVGGQE TSLLLRGRNL NNLGTRIHCT YMGGYTSKEA TGSAYRGTTY DEIDLGSFQI 720 HDASPGVLGR CFIEVENGFK GNSFPVIIAD ATICRELKVL ESVFDAEAKV CDVISVAGSH 780 DYGRPTSRDE VLHFLNELGW LFQRKRICSM LQEPHYALSR FKFLLTFTVE KDFCALVKTL 840 LDILFERNFD SDALSGGLVM LSDMQLLNRA VKRRCRKMVD LLINYSTVNS DSDKRYIFPP 900 NLAGPGGMTP LHLAACMSST DDMIDALTND PLEIGLNCWK SLLDANGQSP YAYALMRNNY 960 SYNNLVARKL ADRRNSQITV TIGDERDQHQ MSMELEHRTS TQFRQGSRSC TKCAIAATKY 1020 TRRVPGAQGL LQRPFIHSML AIAAVCVCVC LFLRGLPDIG LVAPFKWENL GYGTI

Sequence ? help Back to Top

Protein Sequence Length: 1075 aa Download sequence

MMENAGGQVA APIYIHQTLS GRFCDSPVMG RKRDLPYQGP NYQHPYSQQP RFTNPGNDWN  60
PHVWDWDTVR FVAKPLDSRM MHLGTTSTTE QRNKEEASGP VKDTAEDEDD ESLQLNLAGG  120
FTSVEEPVPR PNKRVRSGSP GNGNGNYPMC QVDNCKEDLS NAKDYHRRHK VCEVHSKSTR  180
ALVAKQMQRF CQQCSRFHPL SEFDEGKRSC RRRLAGHNRR RRKTQPEDVT SRLTLPGDGD  240
NKIIGNSDIV NLLAAIARPQ GKNDVRNING SSVLDREQLL RVLSKINSLP LSADLAAKLP  300
NLGSLTRKAS ELLSLDLQNK LNGRASVSTM DLLTVLSATL ATSAPEAHAM LSQKCSQSSD  360
SEKTKLTCSD QAAEPNLNKI PPQEIHSAGG ERSSTSYQSP MEDSDCQVQE AGVNLPLQLF  420
SSSPENDSLP KLASSRKYFS SDSSNPTEDR SPSSSPPVVQ TLFPLKSLAE IVKSDKLPVS  480
KEGSGNPDTS WTCGSNMPFD LFRGSNRGAE ASSIQNFPNQ PGYTSSGSDH SPSSLNSDVQ  540
DRTGRILFKL FDKDPSHLPG TLRTQIFNWL SSSPSEMESY IRPGCVVLSV YVSMPSASWE  600
QLEENLVQRV SSLVQSSDSD FWRSGRFLVN TGRQLASHKD GKIRTCKAWR SCSSPELISV  660
SPLAVVGGQE TSLLLRGRNL NNLGTRIHCT YMGGYTSKEA TGSAYRGTTY DEIDLGSFQI  720
HDASPGVLGR CFIEVENGFK GNSFPVIIAD ATICRELKVL ESVFDAEAKV CDVISVAGSH  780
DYGRPTSRDE VLHFLNELGW LFQRKRICSM LQEPHYALSR FKFLLTFTVE KDFCALVKTL  840
LDILFERNFD SDALSGGLVM LSDMQLLNRA VKRRCRKMVD LLINYSTVNS DSDKRYIFPP  900
NLAGPGGMTP LHLAACMSST DDMIDALTND PLEIGLNCWK SLLDANGQSP YAYALMRNNY  960
SYNNLVARKL ADRRNSQITV TIGDERDQHQ MSMELEHRTS TQFRQGSRSC TKCAIAATKY  1020
TRRVPGAQGL LQRPFIHSML AIAAVCVCVC LFLRGLPDIG LVAPFKWENL GYGTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	869	874	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein