PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP018702.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 25270.6 Da    PI: 9.2042
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP018702.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.82.8e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien+snrqvt+skRrngi+KKA+E+ vLCda+v++ii+ss+gk+ ey+s
  PCP018702.1  9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIYSSSGKMVEYCS 59
                 79***********************************************96 PP
2K-box77.53.5e-2671167199
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  y+ +sgk+l++ak+e+l++e++++kk ++++q e+Rhl+Ged++sL++ eL+ Le++Le++l++iR+k+  +++   ++ ++  k+l++enk+L+ +l
  PCP018702.1  71 YHGQSGKKLWDAKHENLSNEVDRVKKDNDSMQVELRHLKGEDITSLNHLELMALEEALENGLTSIRDKQASFFH--YSYFKQSGKALEDENKRLTYEL 166
                  6778999*************************************************************998875..7899999999999999998776 PP

        K-box  99 e 99 
                  +
  PCP018702.1 167 Q 167
                  5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKVSLIIYSS SGKMVEYCSP  60
STTLTEILDK YHGQSGKKLW DAKHENLSNE VDRVKKDNDS MQVELRHLKG EDITSLNHLE  120
LMALEEALEN GLTSIRDKQA SFFHYSYFKQ SGKALEDENK RLTYELQKQQ EMKIDENVRN  180
MENGYHQRQL GNYNNTQQQI PFAFRVQPIQ PNLQERI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.18e-83MIKC_MADS family protein