PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018741.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 341aa MW: 38054.5 Da PI: 7.9408

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018741.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.7e-12	163	210	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK++Ka++L ++YIk+Lq PCP018741.1 163 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDSIKYIKQLQ 210 5699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MEISSRGGSS ELGMEDPFFI NQWQYMNSLD ELGMLPLAAA FGENLQHSQF HPIFNLKTPI 60 DNAHTTIDRP TKQLKTDGWT SCKTDHLVSN PQVVSVPPNI LSFVSSHHAN QMPVLKPKEE 120 AAAVCSKSTN TLPSDILLSQ DSFGNRNYSS NGISTTTRLS HTQDHIIAER KRREKLSQRF 180 IALSAIVPGL KKMDKASVLG DSIKYIKQLQ DKVKTLEEQT RNKNMESVVF VKKTQLFANG 240 DNSSSDKNGT TGPFDTTLPE IEARFCDTNV LIRIHCEKRK GIVEKTIAEV EKLQLKFINS 300 SVMTFGSCAL DVTIIAQMEA EFSLSVKDLV KNLRAAFELF M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	174	ERKRRE
2	170	175	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-64	bHLH family protein