PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP018796.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 397aa MW: 43307.8 Da PI: 7.4393

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP018796.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00033	164	202	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYI+ L PCP018796.1 164 ERKEKLGERIVALQQLVSPF-----GKTDTASVLLEAMEYIRFL 202 57778888999999999998.....8****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MVVAKRDPFR PNEEEEKILE PKVLYLSAIG ALLYLTQWTR PDISFAVNLL ARYSNAPTRK 60 HWNGVKDIFR YLKVTGLPSF SVDFKSCCFG EFGDTVLSFT CHGSSRPSVV SIMNSCYVKV 120 EGEEGIDVRK MTEQKRSPCA VDQSSITSLP SKRHKTDLSF STKERKEKLG ERIVALQQLV 180 SPFGKTDTAS VLLEAMEYIR FLHEQVKVLS APYLQSTPTA NTQELKPYSL RSRGLSLVPV 240 SSTIGIAQSN GADIWAPIKT TSPKFVFESN GDGGGRQEVG TNGGCNGGSS AGNVVVAMVR 300 VMGVDCETVE VVVAMEARGC GGDHGETMAV VSIVARVMAM EDKVVAAMVM GGGGVKHGGG 360 SGDDGETMEN IVVVVVVVMV TIWWHTYFYF LLLFYRI

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MVVAKRDPFR PNEEEEKILE PKVLYLSAIG ALLYLTQWTR PDISFAVNLL ARYSNAPTRK  60
HWNGVKDIFR YLKVTGLPSF SVDFKSCCFG EFGDTVLSFT CHGSSRPSVV SIMNSCYVKV  120
EGEEGIDVRK MTEQKRSPCA VDQSSITSLP SKRHKTDLSF STKERKEKLG ERIVALQQLV  180
SPFGKTDTAS VLLEAMEYIR FLHEQVKVLS APYLQSTPTA NTQELKPYSL RSRGLSLVPV  240
SSTIGIAQSN GADIWAPIKT TSPKFVFESN GDGGGRQEVG TNGGCNGGSS AGNVVVAMVR  300
VMGVDCETVE VVVAMEARGC GGDHGETMAV VSIVARVMAM EDKVVAAMVM GGGGVKHGGG  360
SGDDGETMEN IVVVVVVVMV TIWWHTYFYF LLLFYRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.3	6e-62	bHLH family protein